>retro_dnov_1038
TCTGACAAGCCCAACTGGGATTACCGTGCTGAAATACAAGCATTTGGACATCAGTTACAGGAAGCCTTCTCGGTAGATCT
TCTCAAAACTGCATTTGTTAATAGCTGCTATATTAAAAGTGAGGAGGCCAAACTCCAAAAACTTGGGATAGAAAAGGGAG
CAGTTCTTCTGAATCTTAAAGATAATCGAAACTATCTGAACAAGGACTATCTTTTTCACAAACTTGTCTCACACAATTTT
TTGAAGACGCGTATCCAGACTTGCTCCCTGAAGGCATCAAAAGTCTTGTTGGTGTTCTCACTGGTGAGGACATAGTGTGT
CATGTGGCTAGAAACTTGGCTGTGGAACAGTTAACACTGAGTGTGGAATTTCCTGTCCCCCAAACTGTATTACAACAGAC
TTTCTTTGCAGTAATTGGAGCTCTACTACAGATCAGTGGACCCCAGAGAACTGCAGTTTTCATCAGGGACTTCTTATTTA
CTCAGTTGACTGGAAAAGAGCTCTTTGAGATTTGGATGATAATAAATCCATAGGTCTACTGAAAAAAGAGTTGAAGAAAA
GGAATATTTCACCTCCTGAATCTAGACTTACTAGGCAGTCTGGAGGCACCACAGCGTTGCCTTTATATTTTGTTGGCTTA
TACTGTGATAGAAAGTTGATTGCAGAAGAATCTGGGGAGACAGTGTTGGTTGCAGAAGAAGAAGCTGCTAGAGTGGCAGT
TAGGATATTTTATGGATTCACTGAGAACAGACGTCCCTGGGACTGTTCACAGCTCAAAGAGAATTTAGAGAGCAGAAAAG
ACCATCACTGCCAGC
ORF - retro_dnov_1038 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
87.27 % |
Parental protein coverage: |
81.87 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | SEKPNWDYHAEIQAFGHRLHETFSIDLLKTAFVNSCYITSEEAKRQKLGIEKEAVLLNLKDNR-ELSEQG |
| S.KPNWDY.AEIQAFGH.L.E.FS.DLLKTAFVNSCYI.SEEAK.QKLGIEK.AVLLNLKDNR..LSEQG |
Retrocopy | SDKPNWDYRAEIQAFGHQLQEAFSVDLLKTAFVNSCYIKSEEAKLQKLGIEKGAVLLNLKDNR<KLSEQG |
|
Parental | ISFSQTCLTQFFEDAYPNLPPEGIKSLVDFLTGEDIVCHVARNLAVEQLTLSAEFPVPQTVLQQTFFAVI |
| .SFSQTCLTQFFEDAYP.L.PEGIKSLV..LTGEDIVCHVARNLAVEQLTLS.EFPVPQTVLQQTFFAVI |
Retrocopy | LSFSQTCLTQFFEDAYPDLLPEGIKSLVGVLTGEDIVCHVARNLAVEQLTLSVEFPVPQTVLQQTFFAVI |
|
Parental | GALLQSSGPQRTAVFIRDFLITQLTGKELFEIWTIINP-MGLLVEELKKRNISPPESRLTRQSGSTTALP |
| GALLQ.SGPQRTAVFIRDFL.TQLTGKELFEIW.IINP..GLL..ELKKRNISPPESRLTRQSG.TTALP |
Retrocopy | GALLQISGPQRTAVFIRDFLFTQLTGKELFEIWMIINP<IGLLKKELKKRNISPPESRLTRQSGGTTALP |
|
Parental | L-FVGLYCDRKLIAEGPGETVLVAEEEAARVALRKIYGFTENRRPWDYSQPKENL-RTEKTITAS |
| L.FVGLYCDRKLIAE..GETVLVAEEEAARVA.R..YGFTENRRPWD.SQ.KENL.R.EKTITAS |
Retrocopy | LYFVGLYCDRKLIAEESGETVLVAEEEAARVAVRIFYGFTENRRPWDCSQLKENL>RAEKTITAS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .00 RPM |
23 .73 RPM |
SRP012922_cerebellum |
0 .00 RPM |
11 .27 RPM |
SRP012922_heart |
0 .00 RPM |
22 .28 RPM |
SRP012922_kidney |
0 .00 RPM |
37 .51 RPM |
SRP012922_liver |
0 .00 RPM |
34 .68 RPM |
SRP012922_lung |
0 .00 RPM |
16 .65 RPM |
SRP012922_quadricep_muscle |
0 .17 RPM |
48 .29 RPM |
SRP012922_spleen |
0 .00 RPM |
17 .17 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_1038 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.