RetrogeneDB ID: | retro_dnov_1076 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_14393:10485..11170(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM173B | ||
Ensembl ID: | ENSDNOG00000002277 | ||
Aliases: | None | ||
Description: | family with sequence similarity 173, member B [Source:HGNC Symbol;Acc:27029] |
Percent Identity: | 68.4 % |
Parental protein coverage: | 98.28 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | GGGSPLEALEEESQLGTVLPTRFEASSLKKRKWGFLFTGIVGGSLVAVYAVATPFIIPALRKICLPFVPA |
GG.SPLEALEEE.Q.G..LP..FEA.SLKKR..GFLFTGIVGGS..A.YAVATPFII.ALRK.CLPFVPA | |
Retrocopy | GGCSPLEALEEEKQSGYALPISFEANSLKKRN*GFLFTGIVGGSFMASYAVATPFIISALRKVCLPFVPA |
Parental | TPKQIENVMTMLRCRRGSVVDIGSGDGRIVIAAAKEGFTAVGYELNPWLVWYSRYRAWQ-EGVHKSAKFY |
TPK.IE.V.T.L.CRRGSVVD..SGD....IAA.KE.FTA...ELNPWL.WY.RY.....EG.HKSAKF. | |
Retrocopy | TPK*IEPVVTVLCCRRGSVVDTWSGDRCVMIAATKEEFTALCCELNPWLIWYCRYHVDE<EGIHKSAKFC |
Parental | ISDLWKVTFSGYTNVVIFGVPQMMPLLERKLELELGQDARVIACRFPFPCWIPA-HVTGEGIDTVWAYDV |
ISDL..VTFS.YTN.VI.GVPQMMPLLERKLELELG.DARVIAC.F.F.C.....HV.GEGID...A.D. | |
Retrocopy | ISDLRTVTFSHYTNIVILGVPQMMPLLERKLELELGEDARVIACGFSFLCCTET<HVAGEGIDAM*ACDA |
Parental | GTFGGSRWRPGRVERSQLAAR |
G.F..S...P..V.RS.L... | |
Retrocopy | GMFKESGRKPAVVGRS*LVTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .39 RPM | 6 .81 RPM |
SRP012922_cerebellum | 0 .41 RPM | 5 .50 RPM |
SRP012922_heart | 0 .93 RPM | 3 .94 RPM |
SRP012922_kidney | 0 .00 RPM | 4 .11 RPM |
SRP012922_liver | 0 .93 RPM | 4 .02 RPM |
SRP012922_lung | 0 .31 RPM | 3 .05 RPM |
SRP012922_quadricep_muscle | 0 .17 RPM | 4 .67 RPM |
SRP012922_spleen | 0 .00 RPM | 2 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000002277 | 1 retrocopy |
retro_dnov_1076 ,
|
Homo sapiens | ENSG00000150756 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020111 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011587 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000025588 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016724 | 1 retrocopy |