RetrogeneDB ID: | retro_dnov_1203 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_162302:700..993(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNAPC5 | ||
Ensembl ID: | ENSDNOG00000006689 | ||
Aliases: | None | ||
Description: | small nuclear RNA activating complex, polypeptide 5, 19kDa [Source:HGNC Symbol;Acc:15484] |
Percent Identity: | 89.9 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MLSRLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRRG-DEILSSQPAPESSQDILMHVDNEA |
MLS.LQEL.KEEETLL.LKAALHDQLN.LKVEEL.LQSMISSRRG.DE.LSSQPAPESSQD.LMHVDNEA | |
Retrocopy | MLSQLQELHKEEETLLQLKAALHDQLN*LKVEELTLQSMISSRRG<DEMLSSQPAPESSQDMLMHVDNEA |
Parental | SINQTALELSTRSHALEEEEEEEEEESDS |
SINQTALELS.RSHALEEE.EEEEEESDS | |
Retrocopy | SINQTALELSKRSHALEEEVEEEEEESDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 8 .95 RPM |
SRP012922_cerebellum | 0 .00 RPM | 7 .01 RPM |
SRP012922_heart | 0 .00 RPM | 1 .62 RPM |
SRP012922_kidney | 0 .00 RPM | 7 .67 RPM |
SRP012922_liver | 0 .00 RPM | 3 .56 RPM |
SRP012922_lung | 0 .00 RPM | 8 .86 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 1 .56 RPM |
SRP012922_spleen | 0 .00 RPM | 8 .58 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000017304 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007484 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000006689 | 1 retrocopy |
retro_dnov_1203 ,
|
Gorilla gorilla | ENSGGOG00000003693 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003990 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016841 | 1 retrocopy | |
Mus musculus | ENSMUSG00000032398 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012935 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008791 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010156 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009201 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014333 | 1 retrocopy |