>retro_dnov_1221
ATGAAAACCAGCCCCCGTCGGCCACTGATTCTCAAAAGACGGAGACTGCCCCTTCATGTTCAAAATGCCCCAGGTGACAC
ATCAGAGGAAGAACCCAAGAGGCCCCCTGCCCAGGAAGAGCCTAGTCAAACGCAGGCCTCTAAGGAGGTGGCGGAACCCA
ACTCTTGCAAGTTTCCTGCAGGGATCAAGATTATTAACCATCCCACCATGCCCAACACCCAAGTGGTAGCCATCCCCAAC
AATGCCAACATCCAGAGCATCATTACAGCATTGACTGCCAAAGGAAAAGAAAGCGGCAGCAGTGGGCCCAACAAATTCAT
CCTCATCAGCTGTGGGGGAACCACCCCTCACCCACCGGGATCCCAGCCTCCAGCCCAAACCAGCAATGATGCCAAGACAG
AAGCGATAACTGAGACCCTGGGTCCAAAGCCTGCAGCGAGGGACACGAATCCTCCTAGACCGCCTGCAGCCCCTCCTGGG
CAGAGATGGGAGAGCTATGCTGCTGGTGAGGCTGTAGGCTGCGCGCTCGACAACAGCTTGACCAACATCCAGTGGCTTGG
AAAGATGAGTTCGGATGGACTGGACTCCTGCAGCATCAAACAAGAAATGGAGGACAAGGAGAATCGTCGCCTGGAGCAGA
GTCAGGTTAAGGTTGAGGAGCCCCCGGGAGCCTCAACATCCTGGCAGGACTCTGTGTCAGAGCGGCCACCCTACTCTTAC
ATGGCCATGATACAATTCGCCATCAACAGCACCGAGAAGAAGCACATGACCTTGAAAGACATCTACACCTGGATCGAGGA
CCACTTTCCCTATTTTAAGCATATCGCCAAGCCCGGCTGGAAGAATTCCATTCGCCACAACCTTTCTCTCCATGACATGT
TTGTTCGGGAGACGTCTGCCAATGGCAAGGTCTCCTTTTGGACCATTCACCCCAGCGCCAATCACTACTTGACGTTGGAC
CAGGTGTTCAAGCAGCAGAAACGACCCACTCCTGAG
ORF - retro_dnov_1221 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
94.88 % |
Parental protein coverage: |
57.64 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MKTSPRRPLILKRRRLPLHVQNAPGDTSEEEPKRPPAQEEPSQTQASKEVAESNSCKFPAGIKIINHPTM |
| MKTSPRRPLILKRRRLPLHVQNAPGDTSEEEPKRPPAQEEPSQTQASKEVAE.NSCKFPAGIKIINHPTM |
Retrocopy | MKTSPRRPLILKRRRLPLHVQNAPGDTSEEEPKRPPAQEEPSQTQASKEVAEPNSCKFPAGIKIINHPTM |
|
Parental | PNTQVVAIPNNADIQSIITALTAKGKESGSSGPNKFILISCGGATPHPPGSQPPAQTSTDAKTEVITETL |
| PNTQVVAIPNNA.IQSIITALTAKGKESGSSGPNKFILISCGG.TPHPPGSQPPAQTS.DAKTE.ITETL |
Retrocopy | PNTQVVAIPNNANIQSIITALTAKGKESGSSGPNKFILISCGGTTPHPPGSQPPAQTSNDAKTEAITETL |
|
Parental | GPKSAARDTNPPRPPAAPPGQRWESYAAGEAVGCALDNSLTNIQWLGKMSSDGLDSCSIKQEMEDKENRR |
| GPK.AARDTNPPRPPAAPPGQRWESYAAGEAVGCALDNSLTNIQWLGKMSSDGLDSCSIKQEMEDKENRR |
Retrocopy | GPKPAARDTNPPRPPAAPPGQRWESYAAGEAVGCALDNSLTNIQWLGKMSSDGLDSCSIKQEMEDKENRR |
|
Parental | LEQSQVKXXEPPGASTSWQDSVSERPPYSYMAMIQFAINSTEKKRMTLKDIYTWIEDHFPYFKHIAKPGW |
| LEQSQVK..EPPGASTSWQDSVSERPPYSYMAMIQFAINSTEKK.MTLKDIYTWIEDHFPYFKHIAKPGW |
Retrocopy | LEQSQVKVEEPPGASTSWQDSVSERPPYSYMAMIQFAINSTEKKHMTLKDIYTWIEDHFPYFKHIAKPGW |
|
Parental | KNSIRHNLSLHDMFVRETSANGKVSFWTIHPSANRYLTLDQVFKPMDPGSPQ |
| KNSIRHNLSLHDMFVRETSANGKVSFWTIHPSAN.YLTLDQVFK......P. |
Retrocopy | KNSIRHNLSLHDMFVRETSANGKVSFWTIHPSANHYLTLDQVFKQQKRPTPE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
1 .36 RPM |
4 .86 RPM |
SRP012922_cerebellum |
0 .00 RPM |
0 .27 RPM |
SRP012922_heart |
0 .00 RPM |
0 .23 RPM |
SRP012922_kidney |
0 .27 RPM |
0 .00 RPM |
SRP012922_liver |
0 .00 RPM |
0 .00 RPM |
SRP012922_lung |
0 .15 RPM |
0 .00 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
0 .00 RPM |
SRP012922_spleen |
2 .98 RPM |
4 .69 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_1221 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.