RetrogeneDB ID: | retro_dnov_1317 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_18076:12589..12936(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFDN6 | ||
Ensembl ID: | ENSDNOG00000011211 | ||
Aliases: | None | ||
Description: | prefoldin subunit 6 [Source:HGNC Symbol;Acc:4926] |
Percent Identity: | 82.91 % |
Parental protein coverage: | 89.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEAQATVGKRLDY |
VEKYQQL.KDLSKS.SGRQKLEAQLTENNI.KEELALLDGSNVVFKLLG.VL.K.EL.EAQATVG.RLD. | |
Retrocopy | VEKYQQL*KDLSKSKSGRQKLEAQLTENNIAKEELALLDGSNVVFKLLGLVLLKKELQEAQATVGTRLDH |
Parental | ITAEIKRYESQLRDLERQSERQRETLAQL-QQEFQRAQAAKAGAPEK |
ITAEIK.Y.SQ.RDLERQSE.QRE.LAQL..QE.Q.A.AAKAGAP.K | |
Retrocopy | ITAEIK*YKSQFRDLERQSEQQREMLAQL<EQEIQQALAAKAGAPKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 30 .53 RPM |
SRP012922_cerebellum | 0 .00 RPM | 35 .74 RPM |
SRP012922_heart | 0 .00 RPM | 30 .63 RPM |
SRP012922_kidney | 0 .00 RPM | 55 .31 RPM |
SRP012922_liver | 0 .00 RPM | 21 .36 RPM |
SRP012922_lung | 0 .00 RPM | 32 .68 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 24 .23 RPM |
SRP012922_spleen | 0 .00 RPM | 27 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000011211 | 2 retrocopies |
retro_dnov_1317 , retro_dnov_2064,
|
Loxodonta africana | ENSLAFG00000012967 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016778 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028341 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000000983 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000006019 | 1 retrocopy |