>retro_dnov_1385
TTAGTGTTTGGGATGTTTTATCAGCCTATGCAGCCTACAAGTCTGTGAAGACTAAGAGTATTTGTGGATATATCTGGTAT
TTATGTAAATAGATTTTCTTTGCACTCTTTATGTCAGGGGAAATCTTCACAGACTTTATATCCTGGTTTCCTTTCTACTA
TGAGATCAAGATAACCTTTGTGCTGTGGTATACCAAGGGAGCCAGCTTACTTTACCACAAGTTTGTCCATCTGTCTGTAT
CCTGCCATGAGAAGGAGATCGACACGTACATCCTACAGGCCAAGGAGCGCAGCTGTGAGACCATGCTCAGCTTCAGGAAG
TAGGGCCTCAATATCCACGTCTTGTCCACTCTACAGGCTGCCACCAAAAGTTAGGTGTGCTGGCTGGTAGGCTGCAGAGC
TTCTCCATGCAGATCTACATGCCATC
ORF - retro_dnov_1385 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
52.32 % |
Parental protein coverage: |
77.49 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | LIFGTLYP-AYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYELKIAFVAWLLSPY |
| L.FG..Y..AY..YK.VK.K.I..Y.......I.FALF...E.FTD.F..WFPFYYE.KI.FV.W....Y |
Retrocopy | LVFGMFYQ<AYAAYKSVKTKSICGYIWYLCK*IFFALFMSGEIFTD-FISWFPFYYEIKITFVLW----Y |
|
Parental | TKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKRGLNVAATAAVMAASKG-QGALSERLR |
| TKG.SLLY.KFVH...S..EKEID....QAK.RS......F.K.GLN........AA.K...G.L..RL. |
Retrocopy | TKGASLLYHKFVHLSVSCHEKEIDTYILQAKERSCETMLSFRK*GLNIHVLSTLQAATKS<LGVLAGRLQ |
|
Parental | SFSMQ-DLTAI |
| SFSMQ.DL.AI |
Retrocopy | SFSMQ<DLHAI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .00 RPM |
2 .72 RPM |
SRP012922_cerebellum |
0 .00 RPM |
8 .11 RPM |
SRP012922_heart |
0 .00 RPM |
0 .70 RPM |
SRP012922_kidney |
0 .00 RPM |
0 .27 RPM |
SRP012922_liver |
0 .00 RPM |
0 .31 RPM |
SRP012922_lung |
0 .15 RPM |
1 .53 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
2 .60 RPM |
SRP012922_spleen |
0 .00 RPM |
1 .95 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_1385 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.