>retro_dnov_1789
ATGGAAAGTGAATATTTGGCAGAACAGGTCCTGGCTGCAATGTCAATGAGCCTCAATGCCTACCCTTTTAATTTCCAAGG
TGCCAAGATCATCACTGGCCAAGAGGAGGGTGCCTATGGCTGGATTACCATTAATTATCTACTGGGCAGATTTACTCAGA
AAATGAGTTGGCTTAACCTGGTGTAAACTGGAAGAAATAGTGAAGAAACCTTTGGAGCCTTGGACCTTGGGGGAGCCTCC
ACACAAATCACTTTTGTGTCTCAAGACAGGAATATTGAGTCTCCAGCCAACTCTCTTCAGTTTCGCCTGTATGGCATGGA
CTTCAGTGTCTACACACACAACTTCTTGTGCTATGGGAAGGATCAAGCACTCTTGCAAAAACTGGCCAAGGACATTCAGA
AAATAAGCAATGGAACCCTCCAAGACCCGTGCTTTCACCCTGGATTTGAGAAGAAAGTGAACGTAAGTGACCTTTACAAT
AACCCCTGCACCAAGAGATTTGAGAAAACTCTTCCATTCAATTGGTTTAAAATCCAGGGCCCTGGAAATTATAAACAATG
CCAGCAAAGCACCCTTGGGATCTTCAACACCAGTTATTGCCCTTACACCCAATGTTCTTTCCATGGGATTTTCTTGCCAC
CACTCTGAGGGAAATTTGGGCCATTTTCGGCATTTTACTTTGTGATGAATTTTTTAAACTTGACGTCAGATAAAGTCACC
TCTCAGGAAATAGCAGTTGACATAATGGAAGAATTCTGCTCTAACCCTTGGGCAGAGCTGAAGAGAAATTTTGGTGGAGT
AAAGGAGAAGTATCTGAGTGAATACTGCTTTTCTGGTGCCTCCATTCTCTTCCTCCTTCTGCATGGCTATCATTTCAAAG
AAGATAGCTGGAGAAATATTCATTTCATGGGCAAGATCCATGGCACCGATGCCGGGTGGACTTTGGGCTACATGCTGAAC
CTGACCAACATGATCCCAGCAGAGCAGCCGCTTTCCACACCTCTCTCCCATTCTACCTATGTCTTCCTCATGGTCCTCTT
CTCCCTGATTCTGGTCACAGTGTTAATCATAGGTTTTATTGCCTTTCATAAGCCTTCATATTTCTGGAAAGAAATGGTA
ORF - retro_dnov_1789 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.54 % |
Parental protein coverage: |
73.86 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MESEYLAEQVLAAMAMSLNAYPFNFQGAKIITGQEEGAYGWITINYLLGKFTQKMSWFPLVSTGRNSKET |
| MESEYLAEQVLAAM.MSLNAYPFNFQGAKIITGQEEGAYGWITINYLLG.FTQKMSW..LV.TGRNS.ET |
Retrocopy | MESEYLAEQVLAAMSMSLNAYPFNFQGAKIITGQEEGAYGWITINYLLGRFTQKMSWLNLV*TGRNSEET |
|
Parental | FGALDLGGASTQITFVPQDRSFESPANFLQFRLYGTDYSVYTHSFLCYGKDQALLQKLAKDIQETSNGTL |
| FGALDLGGASTQITFV.QDR..ESPAN.LQFRLYG.D.SVYTH.FLCYGKDQALLQKLAKDIQ..SNGTL |
Retrocopy | FGALDLGGASTQITFVSQDRNIESPANSLQFRLYGMDFSVYTHNFLCYGKDQALLQKLAKDIQKISNGTL |
|
Parental | QDPCFHPGFEKKMNISDLYNNPCTKRFEKTLPFNWFKIQGTGNYKQCQQSILGIFNTSYCPYTQCSFNGI |
| QDPCFHPGFEKK.N.SDLYNNPCTKRFEKTLPFNWFKIQG.GNYKQCQQS.LGIFNTSYCPYTQCSF.GI |
Retrocopy | QDPCFHPGFEKKVNVSDLYNNPCTKRFEKTLPFNWFKIQGPGNYKQCQQSTLGIFNTSYCPYTQCSFHGI |
|
Parental | FLPPLQGKFGAFSAFYFVMNFLNLTLNKVTSQEIAIDTMEEFCSKPWAELKRTFGGVKEKYLSEYCFSGA |
| FLPPL.GKFG.FSAFYFVMNFLNLT..KVTSQEIA.D.MEEFCS.PWAELKR.FGGVKEKYLSEYCFSGA |
Retrocopy | FLPPL*GKFGPFSAFYFVMNFLNLTSDKVTSQEIAVDIMEEFCSNPWAELKRNFGGVKEKYLSEYCFSGA |
|
Parental | YILSLLMHGYHFKEDNWSNIHFMGKIRGSDVGWTLGYMLNLTNMIPAEEPPSTPLSHSTYVFLMVLFSLI |
| .IL.LL.HGYHFKED.W.NIHFMGKI.G.D.GWTLGYMLNLTNMIPAE.P.STPLSHSTYVFLMVLFSLI |
Retrocopy | SILFLLLHGYHFKEDSWRNIHFMGKIHGTDAGWTLGYMLNLTNMIPAEQPLSTPLSHSTYVFLMVLFSLI |
|
Parental | LVTVLIIGFIAFHKPSYFWKEVV |
| LVTVLIIGFIAFHKPSYFWKE.V |
Retrocopy | LVTVLIIGFIAFHKPSYFWKEMV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .19 RPM |
16 .72 RPM |
SRP012922_cerebellum |
0 .00 RPM |
4 .40 RPM |
SRP012922_heart |
0 .23 RPM |
1 .86 RPM |
SRP012922_kidney |
0 .00 RPM |
7 .12 RPM |
SRP012922_liver |
0 .00 RPM |
3 .72 RPM |
SRP012922_lung |
0 .00 RPM |
10 .23 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
2 .60 RPM |
SRP012922_spleen |
0 .80 RPM |
108 .05 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_1789 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.