>retro_dnov_2468
TCACCTGTGGACAGTTCTGAAGCTTGGAAAACAATAAATGAAGCTCATAATGAAACTAGACAAATATGGATGGTATCTGT
AGTCACTGAAAATGCAGTTTCAGGACATATACAGCTCACACTTCCTGTTTATTTTACACATGCTCCACCACTTGTGGTTA
CTGCAAATATTGTTGAAAAGACAGAAATGGGAAGACAATTAGACAGCCAGTCTTCTACCACTATGGGAGAGGCTGCTGGA
ATCTTGTTACAATGTATGTTGAAATTTCTGTTAAATTTTGGCCCTCTAAGTTTTTATGTTTTGTGCAATACAGTGCAGAT
TTTTGTCCTACTATGTCCATGATGCTAAATCCTCAGTGTGATGACACATATTGCAGAAAGCAGCAAGAGAAAAATACAAG
AAAGATGTTAGCAGCACTGTCCATATAGGAATTGTTCAAGAAGAAAAAATAATACCTAAAGACAATGAGTAGACTATTTA
GTTGGTTGGTATCTGATGTTTTAGAAAAGAAACTGAAAATTCTTCAGGTGCAGTTCCTGACTTACCTGAACGAGTCCAAC
TGGCAAATACAATTCAGAAAAAACAAAATGTTTCAACCAATGGT
ORF - retro_dnov_2468 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
51.44 % |
Parental protein coverage: |
50.62 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | SCVDTFEARMTINTACNELGQTWMASGVSENAVSGHIQLIIPGESACFACAPPLVVAANIDEKTLKWEGV |
| S.VD..EA..TIN.A.NE..Q.WM.S.V.ENAVSGHIQL..P.....F..APPLVV.ANI.EKT...... |
Retrocopy | SPVDSSEAWKTINEAHNETRQIWMVSVVTENAVSGHIQLTLP---VYFTHAPPLVVTANIVEKTEMGRQL |
|
Parental | CAASLPTTMGVVAGILVQNVLKFLLGFGTVSFYLGYNAMQ-DFFPTMSMKPNPQCEDKNCRKQQNE-YKK |
| ...S..TTMG..AGIL.Q..LKFLL.FG..SFY...N..Q.DF.PTMSM..NPQC.D..CRKQQ.....K |
Retrocopy | DSQS-STTMGEAAGILLQCMLKFLLNFGPLSFYVLCNTVQ<DFCPTMSMMLNPQCDDTYCRKQQEKNTRK |
|
Parental | KVAALPKQEVVQEEKEIIHEDNEWGIELVSEVSEEELK-NSLGPIPDLPEGITVAYTIPKTQEDSVPG |
| ..AAL...E.....K............LVS.V.E..LK.NS.G..PDLPE....A.TI.K.Q..S..G |
Retrocopy | MLAALSI*ELFKKKK*YLKTMSRLFSWLVSDVLEKKLK<NSSGAVPDLPERVQLANTIQKKQNVSTNG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .00 RPM |
1 .75 RPM |
SRP012922_cerebellum |
0 .00 RPM |
2 .61 RPM |
SRP012922_heart |
0 .00 RPM |
0 .23 RPM |
SRP012922_kidney |
0 .00 RPM |
0 .82 RPM |
SRP012922_liver |
0 .00 RPM |
0 .77 RPM |
SRP012922_lung |
0 .00 RPM |
1 .53 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
0 .87 RPM |
SRP012922_spleen |
0 .00 RPM |
1 .49 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_2468 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.