>retro_dnov_2500
ATCAATAACCTGGTCTCAGTAGGATATCAAGTCTGCAAAAGAGATGTGCTTTCCCAACTGGACAAGGAAAAGTGTTGATA
GAAGGAATAGGATTTCCTGAATACCACAGTTCAGGGAGGAAAAGTGCCTTGAAAACATATGATATGATAGAAATGATAGA
CTATCAACCTACCTTTAGGAAAAACACTTCTAAAATCATGGGATTGCAGAGATCTCACACCCAAAAGAATTTCTTTAAAT
ATAATTATTTACAAGAAGATTCCTTTCACACATCAATAGTGAAAAAACATGCATTAATTCACAGAAGAAAGAATTCCTAT
TTCAAGAAACCACCTCCAACAATCCACGGTGATCATTCATCTTTCAATCAATGTAAGCATATTCTCCCTAGAAGTAAATC
ATATGAATGTTCCCAAAGGGCTAAAAATTGTATGCAGTGCTCTGACCTCAGACAATACAGT
ORF - retro_dnov_2500 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
63.69 % |
Parental protein coverage: |
51.83 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | INNLVSVETGYQVCKRDVLSQLEQEE-VSREGIVFPQYQNPGRQYAFKTWEMIEMIFSQPTCRKDTSKTM |
| INNLVSV..GYQVCKRDVLSQL..E..V..EGI.FP.Y...GR..A.KT..MIEMI..QPT.RK.TSK.M |
Retrocopy | INNLVSV--GYQVCKRDVLSQLDKEK<VLIEGIGFPEYHSSGRKSALKTYDMIEMIDYQPTFRKNTSKIM |
|
Parental | SLHRSHTRKNSFKCNSLQEESSHTSIVNQYALIHLTKKSYFRKPPPAVLSDYSYVKQHKHLHHTSKSYEC |
| .L.RSHT.KN.FK.N.LQE.S.HTSIV...ALIH..K.SYF.KPPP....D.S...Q.KH....SKSYEC |
Retrocopy | GLQRSHTQKNFFKYNYLQEDSFHTSIVKKHALIHRRKNSYFKKPPPTIHGDHSSFNQCKHILPRSKSYEC |
|
Parental | YQSDKNCIQCSDIRQYN |
| .Q..KNC.QCSD.RQY. |
Retrocopy | SQRAKNCMQCSDLRQYS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
1 .75 RPM |
1 .17 RPM |
SRP012922_cerebellum |
2 .20 RPM |
0 .96 RPM |
SRP012922_heart |
0 .93 RPM |
0 .46 RPM |
SRP012922_kidney |
0 .00 RPM |
0 .27 RPM |
SRP012922_liver |
0 .00 RPM |
0 .31 RPM |
SRP012922_lung |
1 .07 RPM |
0 .76 RPM |
SRP012922_quadricep_muscle |
1 .38 RPM |
0 .17 RPM |
SRP012922_spleen |
0 .69 RPM |
0 .57 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_2500 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.