RetrogeneDB ID: | retro_dnov_2506 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | scaffold_8105:76254..76572(-) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | LZIC | ||
| Ensembl ID: | ENSDNOG00000019688 | ||
| Aliases: | None | ||
| Description: | leucine zipper and CTNNBIP1 domain containing [Source:HGNC Symbol;Acc:17497] |
Retrocopy-Parental alignment summary:
>retro_dnov_2506
GCTATTCAGGCAGCTATCAGCCAAGCCTTTAAAACTCCAGAGGTCATCAAATTATTTGCAAAGAAGCAACCTCGTCAACT
TCGGACAAGTTTAGCAGAGATGGATAGAGATCTCATGGTAGGAAAGCTGGAAAGAGACCTATACACACGACAGAAAGTGG
AAATACTAACAGCTCTCAGGAAACTTGGAGAGAAGCTGACTGCAGATGATGAGGGCTTCTTGTCAGCAAATGCAGGTGCT
ATCCTCAGCCAATTTGAGAAAGTCTCTACAGACCTCGGCTCTGGAGACAAAGTCCTTGCTTTGGCAAGTTTTGAGGTT
GCTATTCAGGCAGCTATCAGCCAAGCCTTTAAAACTCCAGAGGTCATCAAATTATTTGCAAAGAAGCAACCTCGTCAACT
TCGGACAAGTTTAGCAGAGATGGATAGAGATCTCATGGTAGGAAAGCTGGAAAGAGACCTATACACACGACAGAAAGTGG
AAATACTAACAGCTCTCAGGAAACTTGGAGAGAAGCTGACTGCAGATGATGAGGGCTTCTTGTCAGCAAATGCAGGTGCT
ATCCTCAGCCAATTTGAGAAAGTCTCTACAGACCTCGGCTCTGGAGACAAAGTCCTTGCTTTGGCAAGTTTTGAGGTT
ORF - retro_dnov_2506 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 95.28 % |
| Parental protein coverage: | 55.79 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | AIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVGKLERDLYTQQKVEILTALRKLGEKLTADD |
| AIQAAISQAFKTPEVI.LFAKKQP.QLRT.LAEMDRDLMVGKLERDLYT.QKVEILTALRKLGEKLTADD | |
| Retrocopy | AIQAAISQAFKTPEVIKLFAKKQPRQLRTSLAEMDRDLMVGKLERDLYTRQKVEILTALRKLGEKLTADD |
| Parental | EAFLSANAGAILSQFEKVSTDLGSGDKVLALASFEV |
| E.FLSANAGAILSQFEKVSTDLGSGDKVLALASFEV | |
| Retrocopy | EGFLSANAGAILSQFEKVSTDLGSGDKVLALASFEV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .39 RPM | 7 .58 RPM |
| SRP012922_cerebellum | 0 .14 RPM | 5 .22 RPM |
| SRP012922_heart | 0 .00 RPM | 2 .09 RPM |
| SRP012922_kidney | 0 .00 RPM | 5 .20 RPM |
| SRP012922_liver | 0 .15 RPM | 3 .41 RPM |
| SRP012922_lung | 0 .15 RPM | 10 .23 RPM |
| SRP012922_quadricep_muscle | 0 .00 RPM | 3 .29 RPM |
| SRP012922_spleen | 0 .11 RPM | 10 .76 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_2506 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000019688 | 1 retrocopy |
retro_dnov_2506 ,
|
| Echinops telfairi | ENSETEG00000011633 | 1 retrocopy | |
| Otolemur garnettii | ENSOGAG00000001446 | 1 retrocopy |