>retro_dnov_2609
ATGGCCCATGAGCAGGCATCTCCCATGGAAAGTTCTTGGAGAATCCATGAGGAAGTCCACATAAAGGAAGATGTGGGCTT
TGCTCTGCTAGGTCCACTGGAGGGGTTGCCTAATAAGTATGCCGCCTGGACAGTCATTGTTCAAAACGTGCCTGACCTGA
TTAAGACCAGCCAGTCATGCACAGAAGTTGAAAAGTTGCCAGAACTCAGCATTGATGAGCTTGAAGGACACAAGTTGCAG
CACCTTGCCCACCTGATCTTGGGGTACATCACCATGGCCTACGTGTGGCATCAAGGTGCCCAAGATGTCTGTAAGGTCCT
GCCAAGAAATATTGCCATTTCTCACTGCAAAATCTTGGAGAAGCTGAGACTGCCTCTTAACCTGGTGTATGCAGGTTGTG
TCTTGCAAACTGGAAGAAAAAGGACCCCAGTGGGCCCATGACTTATGAAAACATGGACATCCTCTTCTCCTTCCCTGGTG
GAGACTGCAGAAAAGGTTGCTTCCTGGTGTCACTATTGTGGAAATAGCAGCTGCTTCTGCTATCAAAGAAATTCCTGTTA
TACTCAATGCTAAACAACGTCAGGACCAGGGAACTGTGAGAACAGAACTGGAAAAAATAACTGACTGCCTGAAGAAGGCC
ORF - retro_dnov_2609 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
73.15 % |
Parental protein coverage: |
53.15 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MACDQASPMESPWRIREEFHINEDVGFALPDPLEELPKKYDDWMFIAQNLPDLIKTGKLREEVEKLPELS |
| MA..QASPMES.WRI.EE.HI.EDVGFAL..PLE.LP.KY..W..I.QN.PDLIKT.....EVEKLPELS |
Retrocopy | MAHEQASPMESSWRIHEEVHIKEDVGFALLGPLEGLPNKYAAWTVIVQNVPDLIKTSQSCTEVEKLPELS |
|
Parental | IDDLEGHKLQRLAHLVLGYITMAYVWDRGDQDVRKVLPRNIAIPYCRISEMLKLPPILSYADCV-LANWK |
| ID.LEGHKLQ.LAHL.LGYITMAYVW..G.QDV.KVLPRNIAI..C.I.E.L.LP..L.YA.CV.LANWK |
Retrocopy | IDELEGHKLQHLAHLILGYITMAYVWHQGAQDVCKVLPRNIAISHCKILEKLRLPLNLVYAGCV<LANWK |
|
Parental | KKDPSG---VKNMEILFSFPGGDCGKGFFLVSLL-VEIAAASVIKEIPILINAIQHQDQATVKTELEKIT |
| KKDPSG.....NM.ILFSFPGGDC.KG.FLVSLL.VEIAAAS.IKEIP...NA.Q.QDQ.TV.TELEKIT |
Retrocopy | KKDPSGPMTYENMDILFSFPGGDCRKGCFLVSLL<VEIAAASAIKEIPVILNAKQRQDQGTVRTELEKIT |
|
Parental | GCLKEA |
| .CLK.A |
Retrocopy | DCLKKA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .00 RPM |
3 .50 RPM |
SRP012922_cerebellum |
0 .00 RPM |
0 .14 RPM |
SRP012922_heart |
0 .00 RPM |
10 .44 RPM |
SRP012922_kidney |
0 .00 RPM |
1 .10 RPM |
SRP012922_liver |
0 .00 RPM |
1 .08 RPM |
SRP012922_lung |
0 .00 RPM |
411 .75 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
15 .58 RPM |
SRP012922_spleen |
0 .00 RPM |
29 .42 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_2609 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
3 retrocopies.