RetrogeneDB ID: | retro_dnov_2683 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_98113:3218..3491(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SIVA1 | ||
Ensembl ID: | ENSDNOG00000005703 | ||
Aliases: | None | ||
Description: | SIVA1, apoptosis-inducing factor [Source:HGNC Symbol;Acc:17712] |
Percent Identity: | 56.52 % |
Parental protein coverage: | 66.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RGQLLIGRDGRLVRGSVQACEADPSVAVSRACSSCIRSMDGKAACSQCERPLCGHCLRTCWGCGAGACSS |
.G.L..G.DG.LV.....AC.AD.SVAV.RACSSCI.SMDGK.ACS.CE.PLC..CL.T..G..A.A... | |
Retrocopy | QGKLMFGLDGSLVGSLSLACKADLSVAVFRACSSCILSMDGKVACSRCEHPLCERCLSTYGGFRA-APIP |
Parental | CAVVDYGDIHEKALCPVCAVFE |
C......DIH..ALC..CAV.E | |
Retrocopy | CVPQSNNDIHKEALCSDCAVCE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 18 .86 RPM |
SRP012922_cerebellum | 0 .00 RPM | 14 .71 RPM |
SRP012922_heart | 0 .00 RPM | 11 .60 RPM |
SRP012922_kidney | 0 .00 RPM | 16 .43 RPM |
SRP012922_liver | 0 .00 RPM | 8 .36 RPM |
SRP012922_lung | 0 .00 RPM | 33 .60 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 13 .15 RPM |
SRP012922_spleen | 0 .00 RPM | 34 .80 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000024811 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000005703 | 2 retrocopies |
retro_dnov_1591, retro_dnov_2683 ,
|
Mus musculus | ENSMUSG00000064326 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016881 | 1 retrocopy |