RetrogeneDB ID: | retro_dnov_508 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_5501:12191..13061(-) | ||
Located in intron of: | ENSDNOG00000019660 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GNPDA1 | ||
Ensembl ID: | ENSDNOG00000007804 | ||
Aliases: | None | ||
Description: | glucosamine-6-phosphate deaminase 1 [Source:HGNC Symbol;Acc:4417] |
Percent Identity: | 89.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MKLIILDDYSQASEW-AAKYIRNRIIQFNPGPDKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTF |
..LIIL..YSQA.EW.AAKY.RNRIIQFN.GP.KYFTLGLPTGSTPLGCYKKLIEY.KNGDLSFKY.KTF | |
Retrocopy | IRLIILHHYSQANEW<AAKYTRNRIIQFNLGPEKYFTLGLPTGSTPLGCYKKLIEYCKNGDLSFKYIKTF |
Parental | NMDE-YVGLPRDHPESYHSFMWNNFFKHIDIHPGNTYILDGNAADLQAECE-SFEEKITAAGGIELFVGG |
NMD..YVGLPRDHP.SYHSF.WNNFFKHID.HP.NT.ILDGNAADLQAE....FEEKITAAGGIELFVGG | |
Retrocopy | NMDD>YVGLPRDHPGSYHSFTWNNFFKHIDFHPENTHILDGNAADLQAEGDDAFEEKITAAGGIELFVGG |
Parental | IGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFNGELARVPTMALTVGVGTIMDAREVMILITGAH |
IGPD.HIAFNEPGSSL.SRTRVKTLAMDTILANARFFNGEL..VP.MALTVGVGTI.DAREVMILITGAH | |
Retrocopy | IGPDRHIAFNEPGSSLGSRTRVKTLAMDTILANARFFNGELTKVPAMALTVGVGTITDAREVMILITGAH |
Parental | KAFALYKAIEEGVSHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKET |
.AFALYKAIEEGVSHMWT.SAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVH.KLVDPLYSIKEKET | |
Retrocopy | EAFALYKAIEEGVSHMWTGSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHDKLVDPLYSIKEKET |
Parental | EKSQSSKTPYSD |
EKSQSSKTPYSD | |
Retrocopy | EKSQSSKTPYSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 27 .42 RPM |
SRP012922_cerebellum | 0 .27 RPM | 3 .85 RPM |
SRP012922_heart | 0 .23 RPM | 2 .09 RPM |
SRP012922_kidney | 0 .55 RPM | 24 .09 RPM |
SRP012922_liver | 0 .62 RPM | 13 .00 RPM |
SRP012922_lung | 1 .07 RPM | 5 .80 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 1 .56 RPM |
SRP012922_spleen | 0 .92 RPM | 18 .66 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007865 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009884 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007804 | 3 retrocopies |
retro_dnov_1363, retro_dnov_1608, retro_dnov_508 ,
|
Macropus eugenii | ENSMEUG00000015442 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010398 | 1 retrocopy | |
Mus musculus | ENSMUSG00000052102 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007303 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000016508 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000003330 | 2 retrocopies |