RetrogeneDB ID: | retro_dnov_542 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_5931:19978..20798(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AZI2 | ||
Ensembl ID: | ENSDNOG00000011053 | ||
Aliases: | None | ||
Description: | 5-azacytidine induced 2 [Source:HGNC Symbol;Acc:24002] |
Percent Identity: | 77.7 % |
Parental protein coverage: | 70.48 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 1 |
Parental | DNSESLKVLNEQLQSKEVELLQLRTEVETQQVMRNLNPPSSDWEVEKLSCDLKIYGLEQELELMRKECND |
DNSESLKVLNE.LQSKE..L.QLRTEVE.Q.V.RNLNPPSS..EVE.LS.DLK...LEQELELMRKECND | |
Retrocopy | DNSESLKVLNE*LQSKE--LFQLRTEVEAQRVIRNLNPPSSS*EVENLS*DLKFHDLEQELELMRKECND |
Parental | LKIELQKSKQMDLSQEDNLKSRDLQRLNISSDNIQQAYWELKREMSNLHLVTQVQAELLRKLKIPTAIKK |
LK.ELQK.K.M.LSQEDNLKSRDLQRL.ISSDNIQQAY.ELKRE..NLHLVTQV.A.LLRKLK...AIKK | |
Retrocopy | LKGELQKYK*MNLSQEDNLKSRDLQRLSISSDNIQQAY*ELKREKPNLHLVTQV*AKLLRKLKTLAAIKK |
Parental | ACAPVGCVEDFGKDNTKLHLANFTATYKRYTPVSPDCKALCHTTSSPIPGDIKILPEKPILQSWTDNEKS |
A.APV.CVED.GK.NTKLHL.NFTA.....TP..P..KALC.TTS...PGDIKIL.EKP.LQSWTDNEKS | |
Retrocopy | AYAPVRCVEDLGKNNTKLHLTNFTAI*RGHTPLLPNGKALCSTTSCLLPGDIKILSEKPTLQSWTDNEKS |
Parental | IPNDGANFQENNSYGRNSLEDNSWVFPSP-PKSSETAFGEIKSKTLPLPNLPPLHYLDHHNQNCLYKN |
.PNDGANFQE.N.Y.RNSLEDNSW.FP.P..KSS.TAFG..K.KTLPLPNLPPLH.LD.HNQNCL.KN | |
Retrocopy | LPNDGANFQEHNCYSRNSLEDNSWAFPRP>CKSSMTAFG--KTKTLPLPNLPPLHCLDQHNQNCLCKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 44 .73 RPM |
SRP012922_cerebellum | 0 .00 RPM | 31 .89 RPM |
SRP012922_heart | 0 .00 RPM | 12 .99 RPM |
SRP012922_kidney | 0 .00 RPM | 21 .36 RPM |
SRP012922_liver | 0 .00 RPM | 16 .72 RPM |
SRP012922_lung | 0 .00 RPM | 28 .86 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 36 .35 RPM |
SRP012922_spleen | 0 .00 RPM | 39 .03 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010432 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011053 | 2 retrocopies |
retro_dnov_1377, retro_dnov_542 ,
|
Homo sapiens | ENSG00000163512 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000022881 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000008538 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000000043 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000000056 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015075 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004069 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000014956 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005896 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014053 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000014707 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016434 | 1 retrocopy |