>retro_dnov_792
CAAGATGAGGAGGTCACTGAGAGCTGGGAAGAGGCACCAGACAGTGGGCAAATGGACAGTTGGATAAAAACATGAAGATC
ACACAAAAGAAAAGGAGAGCGGGAAACCCAAATCTCCCAAAGTGCCCTTCGTGATTCAGGATGATAGCCTTCCGACCGGT
GCCCTCCACAGATCCACATCCTCAAGAGGTCCACCAGCAATGGTGTGGTCAGCAGCCCCAACTCCACCAGCAGGCCAGCA
CTTCCAGTCAAGTCCTTATCCCAGCAGGAGGCAGAGTTTGCCAAGGCTTGGAAGCAGGTCCTGGGCAGTGCCAACCTTAG
GAGGAGCAGGAGAAACCCATCCTCGACAGACTAACCAGAATCTCCCAGCCTGAAGACAGCAGGCGGCCCAATAATGTGAT
TGCTCAGCCCTTGGGTCCTGATGGGTCACAAGGGTTCAAACAGCACAGA
ORF - retro_dnov_792 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.03 % |
Parental protein coverage: |
99.34 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | EDEEVAESWEEAADSGEIDRRLEKKLKITQKESR-KSKSPPKVPIVIQDDSLPTGP-PPQIRILKRPTSN |
| .DEEV.ESWEEA.DSG..D...........K..R.K.KS.PKVP.VIQDDSLPTG..PPQI.ILKR.TSN |
Retrocopy | QDEEVTESWEEAPDSGQMDSWIKT*RSHKRKGER>KPKS-PKVPFVIQDDSLPTGA<PPQIHILKRSTSN |
|
Parental | GVVSSPNSTSRPALPVKSLAQREAEYAEARKRILGSAS-PEEEQEKPILDRPTRISQPEDSRQPNNVIRQ |
| GVVSSPNSTSRPALPVKSL.Q.EAE.A.A.K..LGSA..P.EEQEKPILDR.TRISQPEDSR.PNNVI.Q |
Retrocopy | GVVSSPNSTSRPALPVKSLSQQEAEFAKAWKQVLGSAN<P*EEQEKPILDRLTRISQPEDSRRPNNVIAQ |
|
Parental | PLGPDGSQGFKQRR |
| PLGPDGSQGFKQ.R |
Retrocopy | PLGPDGSQGFKQHR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .00 RPM |
37 .53 RPM |
SRP012922_cerebellum |
0 .00 RPM |
10 .45 RPM |
SRP012922_heart |
0 .00 RPM |
9 .98 RPM |
SRP012922_kidney |
0 .00 RPM |
12 .87 RPM |
SRP012922_liver |
0 .00 RPM |
19 .04 RPM |
SRP012922_lung |
0 .00 RPM |
21 .53 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
21 .29 RPM |
SRP012922_spleen |
0 .00 RPM |
26 .44 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_792 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.