RetrogeneDB ID: retro_dnov_834

Retrocopy location

• Organism: Armadillo (Dasypus novemcinctus)
• Coordinates: scaffold_112695:5329..5715(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ADPRHL1
• Ensembl ID: ENSDNOG00000017442
• Aliases: None
• Description: ADP-ribosylhydrolase like 1 [Source:HGNC Symbol;Acc:21303]

Sequence

>retro_dnov_834
TTTGGAGCTGCCACCAAAGCAATGTGAATCAGCATGAGATACTGGAAGGCTGAATGGTTGGAAACTCTTACTGAAGTTAG
CATCGAGTGTGACCAAATGACACATAACCATTTTAAAGCCTTCCTTGGGTCACTGTGCATGGCCCTGATTATATCTTATG
CCATCCAAGGAAAGCTGCTTGGTAAGAGGGGAAAGATATGATGAAGGTGGTTCCACTGGCTAAATAATGTAAAAAGACCA
CTGGGCATATGGCAGGATACCAGGAGCATTGGTTTTACTCTGAAGCTAACTGGCATTTTTATTTGGAAGATAGAAAAATC
ACTAAAGACAAGGAAAGTAAAGCCACTTTTTCTGATAATTATGATGTAGAGTAGAGAGTCAAGACA

Alignment

ORF - retro_dnov_834 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.23 %
• Parental protein coverage: 57.27 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FGAATKAMCIGMRYWKPDRLETLIEVSIECGRMTHNHPTGFLGSLCTALFVSYAVQGKPLVQ-WGREMMK
          FGAATKAM.I.MRYWK...LETL.EVSIEC..MTHNH...FLGSLC.AL..SYA.QGK.L....G..MMK
Retrocopy FGAATKAM*ISMRYWKAEWLETLTEVSIECDQMTHNHFKAFLGSLCMALIISYAIQGKLLGK<EGKDMMK

Parental  VVPLAEEYCKKTIRHMAEYQEHWFYFEAKWQFYLEERKITEDKESKASFPDHYDAEERDKT
          VVPLA...CKKT..HMA.YQEHWFY.EA.W.FYLE.RKIT.DKESKA.F.D.YD.E.R.KT
Retrocopy VVPLA-K*CKKTTGHMAGYQEHWFYSEANWHFYLEDRKITKDKESKATFSDNYDVE*RVKT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP012922_ascending_colon	0.00 RPM	0.19 RPM
SRP012922_cerebellum	0.00 RPM	0.00 RPM
SRP012922_heart	0.00 RPM	301.18 RPM
SRP012922_kidney	0.00 RPM	0.00 RPM
SRP012922_liver	0.00 RPM	0.00 RPM
SRP012922_lung	0.00 RPM	0.00 RPM
SRP012922_quadricep_muscle	0.00 RPM	30.12 RPM
SRP012922_spleen	0.00 RPM	0.00 RPM

ChIP-Seq

Dasypus novemcinctus was not studied using ChIP-Seq data.

EST

Dasypus novemcinctus was not studied using EST data.

TSS

Dasypus novemcinctus was not studied using FANTOM5 data.

Lab

retro_dnov_834 was not experimentally validated.

Homology

Retrocopy orthology:

Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000017442	1 retrocopy	retro_dnov_834 ,