RetrogeneDB ID: | retro_dnov_834 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | scaffold_112695:5329..5715(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ADPRHL1 | ||
| Ensembl ID: | ENSDNOG00000017442 | ||
| Aliases: | None | ||
| Description: | ADP-ribosylhydrolase like 1 [Source:HGNC Symbol;Acc:21303] |
Retrocopy-Parental alignment summary:
>retro_dnov_834
TTTGGAGCTGCCACCAAAGCAATGTGAATCAGCATGAGATACTGGAAGGCTGAATGGTTGGAAACTCTTACTGAAGTTAG
CATCGAGTGTGACCAAATGACACATAACCATTTTAAAGCCTTCCTTGGGTCACTGTGCATGGCCCTGATTATATCTTATG
CCATCCAAGGAAAGCTGCTTGGTAAGAGGGGAAAGATATGATGAAGGTGGTTCCACTGGCTAAATAATGTAAAAAGACCA
CTGGGCATATGGCAGGATACCAGGAGCATTGGTTTTACTCTGAAGCTAACTGGCATTTTTATTTGGAAGATAGAAAAATC
ACTAAAGACAAGGAAAGTAAAGCCACTTTTTCTGATAATTATGATGTAGAGTAGAGAGTCAAGACA
ORF - retro_dnov_834 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 70.23 % |
| Parental protein coverage: | 57.27 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | FGAATKAMCIGMRYWKPDRLETLIEVSIECGRMTHNHPTGFLGSLCTALFVSYAVQGKPLVQ-WGREMMK |
| FGAATKAM.I.MRYWK...LETL.EVSIEC..MTHNH...FLGSLC.AL..SYA.QGK.L....G..MMK | |
| Retrocopy | FGAATKAM*ISMRYWKAEWLETLTEVSIECDQMTHNHFKAFLGSLCMALIISYAIQGKLLGK<EGKDMMK |
| Parental | VVPLAEEYCKKTIRHMAEYQEHWFYFEAKWQFYLEERKITEDKESKASFPDHYDAEERDKT |
| VVPLA...CKKT..HMA.YQEHWFY.EA.W.FYLE.RKIT.DKESKA.F.D.YD.E.R.KT | |
| Retrocopy | VVPLA-K*CKKTTGHMAGYQEHWFYSEANWHFYLEDRKITKDKESKATFSDNYDVE*RVKT |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .00 RPM | 0 .19 RPM |
| SRP012922_cerebellum | 0 .00 RPM | 0 .00 RPM |
| SRP012922_heart | 0 .00 RPM | 301 .18 RPM |
| SRP012922_kidney | 0 .00 RPM | 0 .00 RPM |
| SRP012922_liver | 0 .00 RPM | 0 .00 RPM |
| SRP012922_lung | 0 .00 RPM | 0 .00 RPM |
| SRP012922_quadricep_muscle | 0 .00 RPM | 30 .12 RPM |
| SRP012922_spleen | 0 .00 RPM | 0 .00 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_834 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000017442 | 1 retrocopy |
retro_dnov_834 ,
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