>retro_dnov_999
CTGGTCATGGGCCACTTGGTTATTGGCCTCTTATTTGGATTCTGTACAGATTTTATGTCTATGTACATTGGAGAGATATC
GCCCTCTACCTTATGGGTTGCCACGAGCACTCTTAATGAGCCAGGTATCATCATTGGGATTCTGGTGGCCCAGATCTATG
GTCTGGAAATCATCATGTGATCTGGAGAACTGTGACCTGTGCTATTAGTCTTCATCATTATTCCAGATGTCTTGCAGAGT
GTAGCCATTCAATTTTTCCCTGAAAGTCACAGATTCTTGCTCATTAATAGAAAGGAAGAAGAGTATGCCAAGCAGGTCCT
CCAGCAATTTGGAGGCATTCAGGATGTGAGCAATGACATGCAGAAGATGAAAGGTGAGATTGATAACATTTCATAAGAAA
AGAAAGCCAATATGCTGGAGCTCTTTAAAACACCCAGCTACCAGTGGCCTATCATCATTTTCACCATGCTGCAGCTATCT
CAGCAGTTCTCTAGAATCAGTGCTGTGTTTTATTACTCTCCAGGAATCTTCAGACATGTAGATGTTGAAGAAACATTCTA
TGCCATTATTGGTGCCAGTGTGATCAATACAAGCTTCACTGTGATTTCACTGTTTCTTGTGGAAAACGCAGGAAAAAAGC
CTCTACATATGCTAAGCATTGGAGGGATGGCTCTTTGTTCCAGTCTC
ORF - retro_dnov_999 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
50.66 % |
Parental protein coverage: |
50.55 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | LILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQIFGLDSIMGNEDLWPLLLS |
| L..G...IG...G..T.F..MY.GE.SP..L..A..TL...GI..GIL.AQI.GL..IM....L.P.LL. |
Retrocopy | LVMGHLVIGLLFGFCTDFMSMYIGEISPSTLWVATSTLNEPGIIIGILVAQIYGLEIIM*SGEL*PVLLV |
|
Parental | IIFIPALLQCILLPLCPESPRFLLINRNEENQAKSVLKKLRGTQDVSHDLQEMKEESRQMMREKKVTILE |
| .I.IP..LQ.......PES.RFLLINR.EE..AK.VL....G.QDVS.D.Q.MK.E......EKK...LE |
Retrocopy | FIIIPDVLQSVAIQFFPESHRFLLINRKEEEYAKQVLQQFGGIQDVSNDMQKMKGEIDNIS*EKKANMLE |
|
Parental | LFRSPIYRQPILIAVVLQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGIVNTAFTVVSLFVVERA |
| LF..P.Y..PI.I...LQLSQQ.S.I.AVFYYS..IF....V....YA.IG....NT.FTV.SLF.VE.A |
Retrocopy | LFKTPSYQWPIIIFTMLQLSQQFSRISAVFYYSPGIFRHVDVEETFYAIIGASVINTSFTVISLFLVENA |
|
Parental | GRRTLHLIGLAGMAGCAVL |
| G...LH.....GMA.C..L |
Retrocopy | GKKPLHMLSIGGMALCSSL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .00 RPM |
21 .78 RPM |
SRP012922_cerebellum |
0 .00 RPM |
29 .14 RPM |
SRP012922_heart |
0 .00 RPM |
4 .87 RPM |
SRP012922_kidney |
0 .00 RPM |
3 .83 RPM |
SRP012922_liver |
0 .00 RPM |
0 .15 RPM |
SRP012922_lung |
0 .00 RPM |
5 .96 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
1 .21 RPM |
SRP012922_spleen |
0 .00 RPM |
1 .14 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_999 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.