RetrogeneDB ID: | retro_dord_382 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_151451:871..1243(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Chmp3 | ||
Ensembl ID: | ENSDORG00000002851 | ||
Aliases: | None | ||
Description: | charged multivesicular body protein 3 [Source:MGI Symbol;Acc:MGI:1913950] |
Percent Identity: | 79.53 % |
Parental protein coverage: | 57.47 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEME |
.AVL.VAGSLQKSTEVMKAMQSLVKIPEIQATMRELSK.M.KAGIIEE.LEDTFES.............. | |
Retrocopy | MAVL*VAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKVMVKAGIIEELLEDTFESXXXXXXXXXXXXXX |
Parental | IDKILFEITAGALGKAPSKVTDALPEPEPAGATAASEEEEEEEALEAMQSRLATLRS |
IDKILFEI.AG.LGK.PSKVT.ALPEPEPAGATAA...EEEEEALEAMQSRLATLRS | |
Retrocopy | IDKILFEIAAGSLGKVPSKVTGALPEPEPAGATAA---EEEEEALEAMQSRLATLRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000002851 | 1 retrocopy |
retro_dord_382 ,
|
Macropus eugenii | ENSMEUG00000009111 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005492 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000009273 | 1 retrocopy | |
Mus musculus | ENSMUSG00000053119 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002191 | 2 retrocopies | |
Sorex araneus | ENSSARG00000008917 | 1 retrocopy |