RetrogeneDB ID: | retro_dord_746 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_72606:577..928(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDORG00000008339 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.21 % |
Parental protein coverage: | 54.21 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | RLEEPEEPKVLTPEEQLADKLRLKKLQEESDLELAKETFGVNNTVCGIDAMNPSSRDDFTEFGKLLKDKI |
R.EEPEEP.VLTPEE.LADKL.L.KLQEES.L.LAKETFGV..TVCGIDAMNPSSRDD.TEFGKL.KDKI | |
Retrocopy | R*EEPEEPQVLTPEE*LADKLWLQKLQEESNLVLAKETFGVKDTVCGIDAMNPSSRDDLTEFGKLVKDKI |
Parental | TQYEKSLYYASFLEALVRDVCISLEIDDL-KRTNSLTVLCSEKQKEK |
...EKS.YYA.FL.AL..DV..SLEIDDL.K.TNSLTVLC.E..... | |
Retrocopy | IKDEKSFYYARFLKALL*DV*TSLEIDDLEKMTNSLTVLCGENTEAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002412 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000008339 | 7 retrocopies |
retro_dord_208, retro_dord_364, retro_dord_451, retro_dord_470, retro_dord_633, retro_dord_738, retro_dord_746 ,
|
Macropus eugenii | ENSMEUG00000010372 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017696 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027236 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005568 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006431 | 1 retrocopy |