>retro_drer_11
ATGAACAACTCCTCCTCGGTGTGCTGCGCTTTCGACGCTCCCATTCTGGATGAGGTGTTACCCCCTGTTCTGTTCAGCGA
GTTCGTCCTGGGCCTGATGGGGAACGGTCTGGCCCTCTGCATGTTCTTCTTCCACAGGGACTCCTGGAAGCCCAACTCCA
TCTATCTGGCTCATCTGGCTCTGGCCGACTCGCTGGTGCTGTTCTGCCTTCCGTTCCGGGCTGACTACTACCGGCGGGGC
AAGCACTGGGTCTACGGGGACGCTTTCTGCCGTGTGCTGCTGTTTCTGCTGGCTGCAAATCGAGCCGCCGGTATCTTCTT
CCTGACGGCGGTGGCTGTGGACCGATACCTGAAGATCGTGCACCCGCTGAACCCCATCAACCAAATGGGTCTGCGCTACG
CCCTGTGGGTGTCTGTGGGCCTGTGGGCGCTCATCATAGCCATGACCGTATATCTGCTCGCCGATAAACACTTCTACTAT
CGAAATAACCGAACGCAGTGCGAAAGCTTCAATATCTGTTTAGGACACAACGCTCTGTCTGATTGGCACAATTCGTTTTA
CGTTATTCAATTCTTCGTGCCGACGTTCATCGTCATCTACTGCTCCACATGTATAACCTGGCAGCTGAAGGGTAAAACAA
TTGACAAGCACGGTAAAATAAGAAGAGCTGTGCGGTTTGTGTTAGCAGTGGCTTTGGTTTTCATCATATGCTTCTTCCCC
AGTAATGTCTCCCGTATTGCTGTTTGGGTTCTGAAAAGCTGGCATAATGAATGTCAATATTTTCAGGATGCAAATGTGGC
GTTTTATATCACCGTCTGCTTTACGTACTTCAACAGCGTGCTCAATCCTGTGGTCTACTACTTCTCCAGCCCTGCCGTCA
GCAGATCCTTGAGGAAAATATATATGAGGATGTCAGGACAGAAGATTGAGGATGAGCATGAGAAGAATAATCACAGCTCT
GTTACAGTGTCGGCTAACGTCTCTTAA
ORF - retro_drer_11 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.2 % |
Parental protein coverage: |
99.69 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | NNSSLCCTYETPLLDAYLPPVLFSEFVLGLMGNGLALCMFFFHRDSWKPNSIYLAHLALANSLVLFCLPF |
| N.SS.CC....P.LD..LPPVLFSEFVLGLMGNGLALCMFFFHRDSWKPNSIYLAHLALA.SLVLFCLPF |
Retrocopy | NSSSVCCAFDAPILDEVLPPVLFSEFVLGLMGNGLALCMFFFHRDSWKPNSIYLAHLALADSLVLFCLPF |
|
Parental | RADYYRRGKHWVYGDAFCRVLLFLLAANRAAGIFFLTAVAVDRYLKIVHPLNRINQMGLRYALWVSVGLW |
| RADYYRRGKHWVYGDAFCRVLLFLLAANRAAGIFFLTAVAVDRYLKIVHPLN.INQMGLRYALWVSVGLW |
Retrocopy | RADYYRRGKHWVYGDAFCRVLLFLLAANRAAGIFFLTAVAVDRYLKIVHPLNPINQMGLRYALWVSVGLW |
|
Parental | ALIIAMTVYLLADKHFYYLNNHTQCESFNICFGSNSRFTWHNVFYVIQFFVPTFIVIYCSTCITWQLKGK |
| ALIIAMTVYLLADKHFYY.NN.TQCESFNIC.G.N....WHN.FYVIQFFVPTFIVIYCSTCITWQLKGK |
Retrocopy | ALIIAMTVYLLADKHFYYRNNRTQCESFNICLGHNALSDWHNSFYVIQFFVPTFIVIYCSTCITWQLKGK |
|
Parental | TIDKHGKIRRAVRFVLAVALVFIICFFPSNISRISMYVLKLWYNECQYFSDANDAFKTTVCFTYFNSVLN |
| TIDKHGKIRRAVRFVLAVALVFIICFFPSN.SRI...VLK.W.NECQYF.DAN.AF..TVCFTYFNSVLN |
Retrocopy | TIDKHGKIRRAVRFVLAVALVFIICFFPSNVSRIAVWVLKSWHNECQYFQDANVAFYITVCFTYFNSVLN |
|
Parental | PVVYYFSSPAVSGSLRKIYMRILGQKIEENQEKHKTFIIHNSTNVS |
| PVVYYFSSPAVS.SLRKIYMR..GQKIE...EK........S.NVS |
Retrocopy | PVVYYFSSPAVSRSLRKIYMRMSGQKIEDEHEKNNHSSVTVSANVS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Danio rerio was not studied using RNA-Seq expression data.
Danio rerio was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_drer_11 retrocopy.
Danio rerio was not studied using FANTOM5 data.
retro_drer_11 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_drer_11 has 0 orthologous retrocopies within teleost group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.