>retro_drer_12
AGTTCAGCTTCACAAGGTACCACCTATGGTGTAATTACCCAGGCTCAAGGTGCAAGTCAGTCTGCTCCAGGATCTTCATC
CCCATATACAACCATATCATTGCCCAAATATGTTACTAGTCAGTTGATAACTGGACCAAGTTCAAAGCAATTTACCTCCG
TCTATGGCACCCAGACAGGATCCTCTGCCCCTTTTACTTTGAAAGAAAGTACCACATATGGTGAACAAATCCAGACTCAA
GATGCCACAAGTCAATTAGTTTTGGGATCTTCAAACCCTTACGCATCTGTATCATCACCTCAAGTTGTTACAAGTCAGTT
GACGCCTGTGCCAGGTTCGAAGCAGGTTACATCTGTCTATGGCACTCAGACTGGTTCTTTTGCTCCCTTCACTCTGCAAA
AACTATTCCAGGGTAAAGGTTCAACAAGCCCGGTTTTTTCAGTACCTTCAACCTCATACGCCTCTGTATCATTGCCCCAA
GGTGTTACTAGTCAGTCGACCACAGTGCCAAGTTCAAAGCAGATAACCTCTGTCTACCCCACCCAGACAGGATCCTCTGC
CCCTTTCACTTTGCAAGAACTACTCCAGGGTCCAGATTCAACAAGTCAGGTTGTTTATGGATCTTCAACCCCATATGTAT
CTTTATCATTACCCCAAAGTGTTACTAGTCAGTCAACGACAGTGCCAAGTTCAAAGCAGATAACCTCTGTCTATACCACC
CAGGCAGGATCCTCTGTCCCTTTCACTTTGCAAGAACTACTTCAGGGTCAAGATTCAACAAGCCAGGTTGTTTATGAATC
TTCAACCCCATATGTATATTTATCATCGCCCCAAGTTGTTACTAGTCAGTTGACACCTGTGTCAGGTTCAAAGCAGGTTA
CACCCGTGTATACAACCCAGACAGGATCCTCTGTCCCTTTCACTTTGCAAGGACTACTCCAGGGTCAAGATTCAACAAGT
CAGGTTGTTTATGGTTCTTCATTCCCATACTTATTTGTATCGACGCCCCAAGTTGTTACTAGCCAGTTGACACTTGTGCC
AAGTTCAAAGCAGGTTACCACTGTCTATGGCACTCAGACTGATTCTTCGGCTCCCTTCACTCTGCAAAAACTACTTCAGG
GTAAAGGTTCAACAAGCCAGGTTGTTTCAGAACCTTCAACCCCGTATGTATCTGTATCATTGCCACAAGTTGTAACTAGT
CAGACGTATAAAGTGCCAAGTTCGAAGCAGGTAACCTCTGTCTACACCACCCAGACAGGATCCTCTGCCCCTTTCACTTT
GCAAGAACTACTCCAG
ORF - retro_drer_12 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.24 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | SSASQGTTYGVITQAQGASQSAPGSSSPYTTISLPKYVTSQLITGPSSKQFTSVYGTQTGSSAPFTLKES |
| SSASQGTTYGVITQAQGASQSAPGSSSPYTTISLPKYVTSQLITGPSSKQFTSVYGTQTGSSAPFTLKES |
Retrocopy | SSASQGTTYGVITQAQGASQSAPGSSSPYTTISLPKYVTSQLITGPSSKQFTSVYGTQTGSSAPFTLKES |
|
Parental | TTYGGQIQTQDATSQLVLGSSTPYISVSSPQVVTSQLTPVPGSKPVTSVYGTRTGSSAPFTLQRLLQGKG |
| TTYG.QIQTQDATSQLVLGSS.PY.SVSSPQVVTSQLTPVPGSK.VTSVYGT.TGS.APFTLQ.L.QGKG |
Retrocopy | TTYGEQIQTQDATSQLVLGSSNPYASVSSPQVVTSQLTPVPGSKQVTSVYGTQTGSFAPFTLQKLFQGKG |
|
Parental | STSQVVSVPSTPYIAVSLPQGVTSLSTPVSSSKQVTSVYTTQTGPSAPFTLQELLQGQDATSQFVSGSSS |
| STS.V.SVPST.Y..VSLPQGVTS.ST.V.SSKQ.TSVY.TQTG.SAPFTLQELLQG.D.TSQ.V.GSS. |
Retrocopy | STSPVFSVPSTSYASVSLPQGVTSQSTTVPSSKQITSVYPTQTGSSAPFTLQELLQGPDSTSQVVYGSST |
|
Parental | PYVAVSMPQVVTSQS-AVPCSKQVTSVYGTQTGSSAPFTLQRLLQGKDATSKLVLASSTPYVSVSSPQVV |
| PYV..S.PQ.VTSQS..VP.SKQ.TSVY.TQ.GSS.PFTLQ.LLQG.D.TS..V..SSTPYV..SSPQVV |
Retrocopy | PYVSLSLPQSVTSQSTTVPSSKQITSVYTTQAGSSVPFTLQELLQGQDSTSQVVYESSTPYVYLSSPQVV |
|
Parental | TSQLTPVPGSKPVTSVYTTQTGSSVPFTLQGVLQGQDSTSQVVYGSSTPYVSVSLPQDVTSQLTPVPSSK |
| TSQLTPV.GSK.VT.VYTTQTGSSVPFTLQG.LQGQDSTSQVVYGSS.PY..VS.PQ.VTSQLT.VPSSK |
Retrocopy | TSQLTPVSGSKQVTPVYTTQTGSSVPFTLQGLLQGQDSTSQVVYGSSFPYLFVSTPQVVTSQLTLVPSSK |
|
Parental | QVTSVYTTQTGSSAPFTLQGVLQGQDATSQFVSRSLSPYVAFSLPQVVTSQS-AVPSSKQITSVYGTRTG |
| QVT.VY.TQT.SSAPFTLQ..LQG...TSQ.VS....PYV..SLPQVVTSQ...VPSSKQ.TSVY.T.TG |
Retrocopy | QVTTVYGTQTDSSAPFTLQKLLQGKGSTSQVVSEPSTPYVSVSLPQVVTSQTYKVPSSKQVTSVYTTQTG |
|
Parental | SSAPYTLQ |
| SSAP.TLQ |
Retrocopy | SSAPFTLQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Danio rerio was not studied using RNA-Seq expression data.
Danio rerio was not studied using ChIP-Seq data.
7 EST(s) were mapped to retro_drer_12 retrocopy
EST ID |
Start |
End |
Identity |
Match |
Mis-match |
Score |
BM071978 |
19599275 |
19599707 |
98.4 |
424 |
7 |
417 |
BQ263746 |
19598907 |
19599541 |
98.2 |
622 |
12 |
610 |
BQ263821 |
19598910 |
19599421 |
98.5 |
503 |
8 |
495 |
DY552011 |
19598908 |
19599606 |
97.9 |
690 |
8 |
679 |
DY574386 |
19598908 |
19599605 |
97.8 |
688 |
9 |
676 |
EB880570 |
19599345 |
19599749 |
95.8 |
391 |
12 |
377 |
EV558591 |
19598932 |
19599376 |
98.7 |
438 |
6 |
432 |
Danio rerio was not studied using FANTOM5 data.
retro_drer_12 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_drer_12 has 0 orthologous retrocopies within teleost group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.