RetrogeneDB ID:

retro_drer_13

Retrocopy
location
Organism:Zebrafish (Danio rerio)
Coordinates:5:52714657..52715944(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSDARG00000035198
Aliases:gcnt4a, c2gnt3, gcnt4, wu:fc31c11
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:GCNT4 (3 of 3)
Ensembl ID:ENSDARG00000044755
Aliases:si:dkeyp-87d8.8, im:7142583
Description:glucosaminyl (N-acetyl) transferase 4, core 2 [Source:HGNC Symbol;Acc:17973]


Retrocopy-Parental alignment summary:






>retro_drer_13
ATGAGAAGATGTGCTGTCTTACACCGGTTAAGATGCAAGTTCTATGTGTTTGTCGTGTCACTGTTTGTCGTGGTGAAGCT
GGTGTACTTAAAGATTTCAATGGACAACAGTATCTACATCGAGCCCTATGGAGTTACACGTAGATCTCTCAAACCTCAGC
CACTGGATGGCATTAACTGCACAGCCATTTATGACCTGGAACCAGTGGAAATTGGCAAGTCGCTGGAGATGAGGCGCAAA
AAAATTGTGGAAGTTGATGATGGGAGAATTGCTTCGTTCACTGCGGATTGCAAAAGCTACATCGAACAAAGGCGCTACAA
TGAAGTCTTGGTCACTGATGAGGAATGTAACTTTCCAATCGCATACTCTTTGGTGGTGCACAAGAACAGCGCAATGGTGG
AAAGGATACTTCGAGCCATCTATGCACCTCAGAATATTTACTGCATTCATTATGACCAAAAATCCACAAAGGATTTTATT
GCAGCGATGAAGAACTTGGAGAGTTGTTTTCCAAATGTCTTCATCGCCTCTAAAATCGAATCCGTCCAGTATGCGCACAT
TACCAGACTTAAAGCAGATCTCAATTGCCTTTCAGACTTACTGAGTTCAGAGGTCAAATGGAAATATGTCATCAATCTGT
GTGGTCAAGACTTTCCACTGAAGTCTAATTATGAGCTGGTGACTGAGCTCCGGAAACTAAACGGCGCAAACATGCTCGAA
ACAAGCAGGCCCAGCAAAGTAAAAAAGCAACGCTTTCAGTTTAGATACCAGTTGAAAGATGTATCGTATGAATACCAGAA
GATGCCTGTTAAAACCTCCATTGCTAAAGACCCACCGCCACATAACATTGAGATGTTTGTTGGAAGTGCTTACTTTGTCT
TGTCACGGGATTTTGTGACATATGTTATGAATAATCAACTGGCGAAGGATTTTCTTCAGTGGTCAGTCGACACATATTCT
CCCGATGAGCACTTTTGGGCATCAATGGCAAGAGTTCCCGGAGTTCCTGGGGAGTTAGCAAGATCTGAACCTGATGTGTC
AGACCTGAAGAGCAGGACACGCTTGGTTAAATGGAACTATCTCGAAGAGCGATTGTATCCAAAGTGCACTGGTACACACA
GACGTAGTGTCTGCATCTATGGTGCAGCGGAGCTCCGGTGGCTTCTGGAGGACGGCCATTGGTTTGCAAACAAGTTTGAT
CCCAAAGTTGACCCTGTCATTATTAAATGTCTTGAGGAGAAACTTGAGGAGAAGCAACTTCAACAATGCTTGAGGAGAGT
GTCTTAA

ORF - retro_drer_13 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.57 %
Parental protein coverage: 97.89 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalILYKRQCLFSKVFIEVFIVDKIVEIKISPSHCVVLVKYGIIKKMLMMQQLTVKYGINCTKIYEMEPVEVG
.L....C.F.......F.V.K.V..KIS.........YG.....L..Q.L....GINCT.IY..EPVE.G
RetrocopyVLHRLRCKFYVFVVSLFVVVKLVYLKISMDNSIYIEPYGVTRRSLKPQPLD---GINCTAIYDLEPVEIG
ParentalKSLVIRKQKIYKGLTDAAIANATIDCEWFVSSQGYNDIQVTESEREFPLAYSLVVHQDAALVERLLRAVY
KSL..R..KI.....D..IA..T.DC........YN...VT..E..FP.AYSLVVH...A.VER.LRA.Y
RetrocopyKSLEMRRKKIVE-VDDGRIASFTADCKSYIEQRRYNEVLVTDEECNFPIAYSLVVHKNSAMVERILRAIY
ParentalVPHNIYCIHYDRKSSTDFMLAMNGLARCIPNVFIASKLERVQYAGISRLRADLNCLSDLLDSEVKWKYVI
.P.NIYCIHYD.KS..DF..AM..L..C.PNVFIASK.E.VQYA.I.RL.ADLNCLSDLL.SEVKWKYVI
RetrocopyAPQNIYCIHYDQKSTKDFIAAMKNLESCFPNVFIASKIESVQYAHITRLKADLNCLSDLLSSEVKWKYVI
ParentalNLCGQDFPLRTNAELVSDLKGLKGRNMVESKWPGG-KKIRWSVHHLLKNNDSEYYDFPVSTPEEKPPPPH
NLCGQDFPL..N.ELV..L..L.G.NM.E...P...KK.R......LK....EY...PV.T...K.PPPH
RetrocopyNLCGQDFPLKSNYELVTELRKLNGANMLETSRPSKVKKQRFQFRYQLKDVSYEYQKMPVKTSIAKDPPPH
ParentalNIEMFVGSAYFTLSREFVYFVHWSSLAKDFLAWSEDTFSPDEHFWATLVRVPGVPGEVPRSDPEISELIS
NIEMFVGSAYF.LSR.FV..V....LAKDFL.WS.DT.SPDEHFWA...RVPGVPGE..RS.P..S.L.S
RetrocopyNIEMFVGSAYFVLSRDFVTYVMNNQLAKDFLQWSVDTYSPDEHFWASMARVPGVPGELARSEPDVSDLKS
ParentalKTHLVKWSYLENDLYPECTGVSVRSVCIYGAAELRWLLNYGHWFANKVDPTVDPVLIECLEEKLEEKR
.T.LVKW.YLE..LYP.CTG...RSVCIYGAAELRWLL..GHWFANK.DP.VDPV.I.CLEEKLEEK.
RetrocopyRTRLVKWNYLEERLYPKCTGTHRRSVCIYGAAELRWLLEDGHWFANKFDPKVDPVIIKCLEEKLEEKQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Danio rerio was not studied using RNA-Seq expression data.
Danio rerio was not studied using ChIP-Seq data.
1 EST(s) were mapped to retro_drer_13 retrocopy
EST ID Start End Identity Match Mis-match Score
EB790084 52714710 52715264 99.1 548 5 542
Danio rerio was not studied using FANTOM5 data.
retro_drer_13 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_drer_13 has 0 orthologous retrocopies within teleost group .


Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Danio rerio ENSDARG00000044755 1 retrocopy
retro_drer_13 ,



Copyright © RetrogeneDB 2014-2017