>retro_drer_13
ATGAGAAGATGTGCTGTCTTACACCGGTTAAGATGCAAGTTCTATGTGTTTGTCGTGTCACTGTTTGTCGTGGTGAAGCT
GGTGTACTTAAAGATTTCAATGGACAACAGTATCTACATCGAGCCCTATGGAGTTACACGTAGATCTCTCAAACCTCAGC
CACTGGATGGCATTAACTGCACAGCCATTTATGACCTGGAACCAGTGGAAATTGGCAAGTCGCTGGAGATGAGGCGCAAA
AAAATTGTGGAAGTTGATGATGGGAGAATTGCTTCGTTCACTGCGGATTGCAAAAGCTACATCGAACAAAGGCGCTACAA
TGAAGTCTTGGTCACTGATGAGGAATGTAACTTTCCAATCGCATACTCTTTGGTGGTGCACAAGAACAGCGCAATGGTGG
AAAGGATACTTCGAGCCATCTATGCACCTCAGAATATTTACTGCATTCATTATGACCAAAAATCCACAAAGGATTTTATT
GCAGCGATGAAGAACTTGGAGAGTTGTTTTCCAAATGTCTTCATCGCCTCTAAAATCGAATCCGTCCAGTATGCGCACAT
TACCAGACTTAAAGCAGATCTCAATTGCCTTTCAGACTTACTGAGTTCAGAGGTCAAATGGAAATATGTCATCAATCTGT
GTGGTCAAGACTTTCCACTGAAGTCTAATTATGAGCTGGTGACTGAGCTCCGGAAACTAAACGGCGCAAACATGCTCGAA
ACAAGCAGGCCCAGCAAAGTAAAAAAGCAACGCTTTCAGTTTAGATACCAGTTGAAAGATGTATCGTATGAATACCAGAA
GATGCCTGTTAAAACCTCCATTGCTAAAGACCCACCGCCACATAACATTGAGATGTTTGTTGGAAGTGCTTACTTTGTCT
TGTCACGGGATTTTGTGACATATGTTATGAATAATCAACTGGCGAAGGATTTTCTTCAGTGGTCAGTCGACACATATTCT
CCCGATGAGCACTTTTGGGCATCAATGGCAAGAGTTCCCGGAGTTCCTGGGGAGTTAGCAAGATCTGAACCTGATGTGTC
AGACCTGAAGAGCAGGACACGCTTGGTTAAATGGAACTATCTCGAAGAGCGATTGTATCCAAAGTGCACTGGTACACACA
GACGTAGTGTCTGCATCTATGGTGCAGCGGAGCTCCGGTGGCTTCTGGAGGACGGCCATTGGTTTGCAAACAAGTTTGAT
CCCAAAGTTGACCCTGTCATTATTAAATGTCTTGAGGAGAAACTTGAGGAGAAGCAACTTCAACAATGCTTGAGGAGAGT
GTCTTAA
ORF - retro_drer_13 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
59.57 % |
Parental protein coverage: |
97.89 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | ILYKRQCLFSKVFIEVFIVDKIVEIKISPSHCVVLVKYGIIKKMLMMQQLTVKYGINCTKIYEMEPVEVG |
| .L....C.F.......F.V.K.V..KIS.........YG.....L..Q.L....GINCT.IY..EPVE.G |
Retrocopy | VLHRLRCKFYVFVVSLFVVVKLVYLKISMDNSIYIEPYGVTRRSLKPQPLD---GINCTAIYDLEPVEIG |
|
Parental | KSLVIRKQKIYKGLTDAAIANATIDCEWFVSSQGYNDIQVTESEREFPLAYSLVVHQDAALVERLLRAVY |
| KSL..R..KI.....D..IA..T.DC........YN...VT..E..FP.AYSLVVH...A.VER.LRA.Y |
Retrocopy | KSLEMRRKKIVE-VDDGRIASFTADCKSYIEQRRYNEVLVTDEECNFPIAYSLVVHKNSAMVERILRAIY |
|
Parental | VPHNIYCIHYDRKSSTDFMLAMNGLARCIPNVFIASKLERVQYAGISRLRADLNCLSDLLDSEVKWKYVI |
| .P.NIYCIHYD.KS..DF..AM..L..C.PNVFIASK.E.VQYA.I.RL.ADLNCLSDLL.SEVKWKYVI |
Retrocopy | APQNIYCIHYDQKSTKDFIAAMKNLESCFPNVFIASKIESVQYAHITRLKADLNCLSDLLSSEVKWKYVI |
|
Parental | NLCGQDFPLRTNAELVSDLKGLKGRNMVESKWPGG-KKIRWSVHHLLKNNDSEYYDFPVSTPEEKPPPPH |
| NLCGQDFPL..N.ELV..L..L.G.NM.E...P...KK.R......LK....EY...PV.T...K.PPPH |
Retrocopy | NLCGQDFPLKSNYELVTELRKLNGANMLETSRPSKVKKQRFQFRYQLKDVSYEYQKMPVKTSIAKDPPPH |
|
Parental | NIEMFVGSAYFTLSREFVYFVHWSSLAKDFLAWSEDTFSPDEHFWATLVRVPGVPGEVPRSDPEISELIS |
| NIEMFVGSAYF.LSR.FV..V....LAKDFL.WS.DT.SPDEHFWA...RVPGVPGE..RS.P..S.L.S |
Retrocopy | NIEMFVGSAYFVLSRDFVTYVMNNQLAKDFLQWSVDTYSPDEHFWASMARVPGVPGELARSEPDVSDLKS |
|
Parental | KTHLVKWSYLENDLYPECTGVSVRSVCIYGAAELRWLLNYGHWFANKVDPTVDPVLIECLEEKLEEKR |
| .T.LVKW.YLE..LYP.CTG...RSVCIYGAAELRWLL..GHWFANK.DP.VDPV.I.CLEEKLEEK. |
Retrocopy | RTRLVKWNYLEERLYPKCTGTHRRSVCIYGAAELRWLLEDGHWFANKFDPKVDPVIIKCLEEKLEEKQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Danio rerio was not studied using RNA-Seq expression data.
Danio rerio was not studied using ChIP-Seq data.
1 EST(s) were mapped to retro_drer_13 retrocopy
EST ID |
Start |
End |
Identity |
Match |
Mis-match |
Score |
EB790084 |
52714710 |
52715264 |
99.1 |
548 |
5 |
542 |
Danio rerio was not studied using FANTOM5 data.
retro_drer_13 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_drer_13 has 0 orthologous retrocopies within teleost group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.