RetrogeneDB ID: retro_drer_16

Retrocopy location

• Organism: Zebrafish (Danio rerio)
• Coordinates: 15:30724332..30725319(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSDARG00000094080
• Aliases: or103-1, olfr13, olfr13.1, or13.1, or8, zor8
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: or103-5
• Ensembl ID: ENSDARG00000075128
• Aliases: None
• Description: odorant receptor, family C, subfamily 103, member 5 [Source:ZFIN;Acc:ZDB-GENE-070806-52]

Sequence

>retro_drer_16
ATGTCAGCCGGGAACATCAGCTTTGTTAAGGAATTTTTTATCGTTGGTTTTCCTGGGCTTCAAAAGGGATACTTTGACTC
AGTGGCTGCTCTGATGCTTTTTGTCTTTGTGTGTATCTTAGCAGGGAATGGAACATTTCTAATACTTTTTAGTCTGGAAA
AAAGCCTCCATAAACCTATGTATTATGTCATCTTAAACTTAGTTGCAAGCGATATATTATTTAGCACTACTACCCTGCCA
AAAATTATTGCTAGGTATTTGTTTCAAGATGGTAGTATTTCATTTATGGGTTGCTTCATTCAAATGTATTTTGTGCATTA
TTTTGGTACAGTCAATGCTTTTATCCTGGCAATAATGGCCTTTGATAGGTATGTAGCCATTTGTAATCCCTTAAGATATC
CCAATATAGTCACAAAGTGGAACATTTTCTATCTTTGTCTCATTTCATGGGTTATAGCAAATGTAACCCCTTTAATGATG
GTAATAAGAGCTTACCCTCTCCCATACTGCGCAGAAAACACCATTATACAATGTTACTGTGATCACATTTCTATAACATC
GCTTGCATGCACCAATCGTGCACCATATAGTATTCCAGCTTTTGTTCTTGCTATGGTTGCGTTGCTTACTCCCCTGGCCT
TTATAGTTTTCTCTTATTGTGCCATCATTTTGGCAGTTCTGCGTATATCAAGCACTCAAGCAAGACTGAAGACTTTCTCC
ACCTGCAGTCCTCAGCTCATCATAATTGCTCTCTATTTTCTACCCAGGTGTTTTATTTATTTATCAAGCAATATCGGCAT
CTACTTCAGCACTGATTTGCGATTAGCCATTATTATGATGTATAGTCTGTTTCCACCCATGTTCAACCCTCTCATTTATT
GCTTAAGGACAAAAGATGTAAAGGAATGCTTAGTTAAAAGACTTAAAATCTCAACGAATGTCAAGTTTAATCTAACAAAA
GTTGACATATCCTCAGTATCTTCATAA

Alignment

ORF - retro_drer_16 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.76 %
• Parental protein coverage: 90.55 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LFIYTFMAI-SGNGTFLILFSLEKSLHKPMYYVILNLVASDILFSTTTLPKIIARYLFQDGSISFMGCFI
          L....F..I..GNGTFLILFSLEKSLHKPMYYVILNLVASDILFSTTTLPKIIARYLFQDGSISFMGCFI
Retrocopy LMLFVFVCILAGNGTFLILFSLEKSLHKPMYYVILNLVASDILFSTTTLPKIIARYLFQDGSISFMGCFI

Parental  QMYFVHYFGTVNAFILAIMAFDRYVAICNPLRYPNIVTKWNIFYLCLISWAFVLAMVALLTPLRGRMNFC
          QMYFVHYFGTVNAFILAIMAFDRYVAICNPLRYPNIVTKWNIFYLCLISW...................C
Retrocopy QMYFVHYFGTVNAFILAIMAFDRYVAICNPLRYPNIVTKWNIFYLCLISWVIANVTPLMMVIRAYPLPYC

Parental  SNNSIIHCYCDHVSITTLACTDRSLYSIPALIYAFLILLVPFAVIIFSYCSIFIAVMRISGSQGRMKTFS
          ..N.II.CYCDH.SIT.LACT.R..YSIPA...A...LL.P.A.I.FSYC.I..AV.RIS..Q.R.KTFS
Retrocopy AENTIIQCYCDHISITSLACTNRAPYSIPAFVLAMVALLTPLAFIVFSYCAIILAVLRISSTQARLKTFS

Parental  TCSPQLIIIALYFIPRILNFLSSNIGLKFSTDLRLIMIMMYSVLPPLINPIIYCLRTEEVKKVLRQQFK
          TCSPQLIIIALYF.PR....LSSNIG..FSTDLRL..IMMYS..PP..NP.IYCLRT..VK..L....K
Retrocopy TCSPQLIIIALYFLPRCFIYLSSNIGIYFSTDLRLAIIMMYSLFPPMFNPLIYCLRTKDVKECLVKRLK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Danio rerio was not studied using RNA-Seq expression data.

ChIP-Seq

Danio rerio was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_drer_16 retrocopy.

TSS

Danio rerio was not studied using FANTOM5 data.

Lab

retro_drer_16 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_drer_16 has 0 orthologous retrocopies within teleost group .

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Danio rerio	ENSDARG00000075128	1 retrocopy	retro_drer_16 ,