>retro_drer_21
AAGCGGGCGGGCTGGACGCGCACTCTGGCGTTCACCGTGTGTTCTGCAGCTATCGGAGGCACGTTTCAGTACGGCTACAA
CATCTCCATCATCAACGCGCCCACTGCGCATGTGCAGAGCTTCATCAACGCCAGCTGCGTGCGGCGCGGGGCGGCGCTGG
ACCCGGCGCGGGTGACGCTGGTGTGGACGCTGGCGGTGTCGGTGTTCCCGCTCGGGGGGCTGCTGGGCTCTCTGCTGGCG
GGGCCGATGGCGGTGCGGTGCGGCCGGAGAGGAGCGCTGCTGCTTAATAACATGTTCCTGCTGCTCGGTGCGCTGCTGGC
CCTGAGCTGCCGCGCCGCCGGCTCCTTCGAGATGCTGATCACTGCCCGTCTGCTGGTGGGCATCAACGCGGGCGTCAGCA
TGAACGTGCAGCCCATGTACTTTGGCGAGAGCGCACCCAAGCATCTGCGCGGCGCCGTGGCCTTCTCCTCCGCTGTGTTC
ACGGCGCTGGGCATCCTGATGGGGCAGCTGGCGGGCCTGACGGCGGTGCTGGGCAGCGAGGAGCGCTGGCATTACCTGCT
GTCCAGTAATGCGCTGCCCGGCCTGCTGCAGCTGCTGCTCCTGCCCTGCTGCCCCGAGAGCCCGCGCTTCCTGCTGATCG
ACCGCGGCGACAGCGACGCCTGCGCCCGCGCCCTCGCCCGCCTGCGCAGCGGCAGCACCGCCGCAGAGATGGAGGAGCTG
CTGCAGGAGCAGGCGCAGGCGGGTGACGCGCAGGCAAAAACTATCTGGCAGCTGTTCGCGGACCGCAGCCTCCGCCGCCA
GCTCTGCATCGTGATGACGGCCAGCAGCGTCATGATGCTCTGCGGCAACGACTCCATCTACTTCTACGCCTCCTACATCT
TCCAGCAGGCGGGCATCCCCTCCGCCAGCATCCAGTACGTGACGGTGGGCACGGGCGCCTGCGAGTTCCTCTCTGCTGTC
ACCTGTAATCTGCTGATCGAGCGGGTGGGCCGGCGCCCCCTGCTGGCCGGAGGGTACCTGCTGATGTCCTGCTGGGCCGT
GGTGTTCACGGTGGCGCTGTCTCTGCAGGACGCGGTGCCCGGGATGCCCTACCTCAGCATGACCTGTGTGTTCGCCTACA
TCCTGAGCTTCGGCATGGGCCCCGCGGGGGTCACCGGGATCCTGCCCGCAGAGCTCTTCCAGCAGACGGAGCGTCCCGCC
GCCTACATGATCGCCGGCTCCATGATGTGGCTCTGCCTGTTCCTGGTGGGCATGGCCTTCCCCTTTATAGTGGCGGGTCT
GGGCCAGTTCTGCTTCCTGCCCTTCTGCGGCGTCTGCGTGGCCGGCTGCGTGTTCATCAGCTGCAGCTTACCGGAGACCA
AAGGGCGGACGCTGGCGGAGATCACGGCGGAGTTCCAGAAG
ORF - retro_drer_21 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
61.41 % |
Parental protein coverage: |
93.43 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | EKKGHSYTLVLMVTSAAIGGTLQYGYNLAIMNAPTIFIQNFVNETFQERWGIQLGVYEVTLIWTFIVSIF |
| ...G...TL...V.SAAIGGT.QYGYN..I.NAPT...Q.F.N.....R.G..L....VTL.WT..VS.F |
Retrocopy | KRAGWTRTLAFTVCSAAIGGTFQYGYNISIINAPTAHVQSFINASCVRR-GAALDPARVTLVWTLAVSVF |
|
Parental | SLGGLTGALIAGPMSVRLGRKKTLLLNNVFLLSSSLLALLSRTAKSFEMIIISRFLVGINAGISMNVQPM |
| .LGGL.G.L.AGPM.VR.GR...LLLNN.FLL...LLAL..R.A.SFEM.I..R.LVGINAG.SMNVQPM |
Retrocopy | PLGGLLGSLLAGPMAVRCGRRGALLLNNMFLLLGALLALSCRAAGSFEMLITARLLVGINAGVSMNVQPM |
|
Parental | YFGESAPKHLRGAVSLSSAVFTSFGLVLGQVVSLRELLGSEPYWQYLLASNAIPGFIQLLTLPWFPESPR |
| YFGESAPKHLRGAV..SSAVFT..G...GQ...L...LGSE..W.YLL.SNA.PG..QLL.LP..PESPR |
Retrocopy | YFGESAPKHLRGAVAFSSAVFTALGILMGQLAGLTAVLGSEERWHYLLSSNALPGLLQLLLLPCCPESPR |
|
Parental | YLLFDCKDKEACLSALKRLRGCEVRREELDELLQEQNEIKSDRAKQPWDLLTDRSVRWQLISVAVLSSAM |
| .LL.D..D..AC..AL.RLR......E...ELLQEQ.......AK..W.L..DRS.R.QL..V...SS.M |
Retrocopy | FLLIDRGDSDACARALARLRSGSTAAE-MEELLQEQAQAGDAQAKTIWQLFADRSLRRQLCIVMTASSVM |
|
Parental | QLCGNDSIYFYASYVFQEAGISAGQIQYVTIGTGMCEFTACILCNLLIERLGRKLMLMGGYVLMTGWAVV |
| .LCGNDSIYFYASY.FQ.AGI....IQYVT.GTG.CEF.....CNLLIER.GR...L.GGY.LM..WAVV |
Retrocopy | MLCGNDSIYFYASYIFQQAGIPSASIQYVTVGTGACEFLSAVTCNLLIERVGRRPLLAGGYLLMSCWAVV |
|
Parental | FTVALSLENIVTWMPYLSMTCIFTYILSFGMGPAGVSVILPTEIFNQTARPAACMTAGFLMWLNLFIIGM |
| FTVALSL...V..MPYLSMTC.F.YILSFGMGPAGV..ILP.E.F.QT.RPAA.M.AG..MWL.LF..GM |
Retrocopy | FTVALSLQDAVPGMPYLSMTCVFAYILSFGMGPAGVTGILPAELFQQTERPAAYMIAGSMMWLCLFLVGM |
|
Parental | IFPFLVSGLGQYCFVPFGTVCLVTATYIHMVLPETKGKTLPMITKEFYK |
| .FPF.V.GLGQ.CF.PF..VC......I...LPETKG.TL..IT.EF.K |
Retrocopy | AFPFIVAGLGQFCFLPFCGVCVAGCVFISCSLPETKGRTLAEITAEFQK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Danio rerio was not studied using RNA-Seq expression data.
Danio rerio was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_drer_21 retrocopy.
Danio rerio was not studied using FANTOM5 data.
retro_drer_21 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_drer_21 has 0 orthologous retrocopies within teleost group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.