RetrogeneDB ID: | retro_drer_36 | ||
Retrocopylocation | Organism: | Zebrafish (Danio rerio) | |
| Coordinates: | 6:29511213..29511489(+) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | si:dkey-241l7.5 | ||
| Ensembl ID: | ENSDARG00000088989 | ||
| Aliases: | None | ||
| Description: | si:dkey-241l7.5 [Source:ZFIN;Acc:ZDB-GENE-041014-237] |
Retrocopy-Parental alignment summary:
>retro_drer_36
CTGGCTTCTGTGCATGATCAAGTGGAGAATGATTTTCTGCTGAGTCTGGTGCCGGGCTCCACACGCTGCTGGATTGGTGG
CCATGATGGTGAACAAGATGGACAGTGGTTGTGGTCTGATGGTTCTGTGTATGGTTACACCAACTGGTGCTCAGGAGAGC
CTAGTGGCAGGTCTGAGCACTGCTTGGAGATCAACTGGACATCAGACCATTGCTGGAACAACCAGGGCTGTTCGACCTGA
ATGGGCTATTTGTGTGCTAAACCGCTTGTACCGTGT
CTGGCTTCTGTGCATGATCAAGTGGAGAATGATTTTCTGCTGAGTCTGGTGCCGGGCTCCACACGCTGCTGGATTGGTGG
CCATGATGGTGAACAAGATGGACAGTGGTTGTGGTCTGATGGTTCTGTGTATGGTTACACCAACTGGTGCTCAGGAGAGC
CTAGTGGCAGGTCTGAGCACTGCTTGGAGATCAACTGGACATCAGACCATTGCTGGAACAACCAGGGCTGTTCGACCTGA
ATGGGCTATTTGTGTGCTAAACCGCTTGTACCGTGT
ORF - retro_drer_36 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 93.48 % |
| Parental protein coverage: | 60.13 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LASVHDQVENDFLLSLVPGSTRCWIGGHDGEQDGQWLWSDGSVYGYTNWCSGEPSSGSEHCLEINWTSNH |
| LASVHDQVENDFLLSLVPGSTRCWIGGHDGEQDGQWLWSDGSVYGYTNWCSGEPS..SEHCLEINWTS.H | |
| Retrocopy | LASVHDQVENDFLLSLVPGSTRCWIGGHDGEQDGQWLWSDGSVYGYTNWCSGEPSGRSEHCLEINWTSDH |
| Parental | CWNNQGCSTRMGYLCAKRRVPC |
| CWNNQGCST.MGYLCAK..VPC | |
| Retrocopy | CWNNQGCST*MGYLCAKPLVPC |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Danio rerio was not studied using RNA-Seq expression data.
Danio rerio was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_drer_36 retrocopy.
Danio rerio was not studied using FANTOM5 data.
retro_drer_36 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_drer_36 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Danio rerio | ENSDARG00000088989 | 2 retrocopies |
retro_drer_20, retro_drer_36 ,
|