RetrogeneDB ID: | retro_ecab_127 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 1:46143120..46143515(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000021793 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSECAG00000024336 | ||
Aliases: | None | ||
Description: | ribosomal protein S14 [Source:HGNC Symbol;Acc:10387] |
Percent Identity: | 65.41 % |
Parental protein coverage: | 87.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAA-MLAAQDVA |
VISL.PQVA..EN.F.VCHIFA.F.D.FV.VT.L.GKE.IC..TGGM.VK.D..ES.PYA..MLA.Q.VA | |
Retrocopy | VISLRPQVAKEENAFAVCHIFAAFSDSFVRVTSLFGKEAICPMTGGMTVKVDQNESLPYAT<MLATQVVA |
Parental | QRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGG |
Q.CK.LG.TALHIK...T.GNRTKT.G....S.LRAL..S..KI..IEDV..IPSDST..KGG | |
Retrocopy | QSCKVLGTTALHIKPWLTVGNRTKTLGSEVHSVLRALVCSEKKIEQIEDVISIPSDSTCKKGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 599 .86 RPM |
SRP021940_cerebellum | 0 .00 RPM | 259 .40 RPM |
SRP021940_embryo | 0 .08 RPM | 423 .13 RPM |
SRP021940_placental_villous | 0 .00 RPM | 279 .91 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 416 .53 RPM |
SRP021940_testis | 0 .00 RPM | 213 .51 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004644 | 2 retrocopies | |
Bos taurus | ENSBTAG00000008570 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000018094 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000020981 | 1 retrocopy | |
Equus caballus | ENSECAG00000024336 | 3 retrocopies |
retro_ecab_127 , retro_ecab_282, retro_ecab_522,
|
Latimeria chalumnae | ENSLACG00000016164 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000031195 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000013279 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000002848 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000013776 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010366 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011509 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000721 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008422 | 17 retrocopies |