>retro_ecab_177
ATGGGCTGCAATGTGACTTTCCACCTTTCTTACAAATTCCGGTTACCGTTGCTTCTTACCTTATGCCTGACGGTGGTTGG
GTGGGCCACCAGGAACTACTTTGTAGCTGCTATTCAAGAGATTCCTAAAGCAAAGGATTTCATGCCTAATTTCAACAACC
CTCTCGTTTTGGAGAAGAAACAAACTCTGACCAATGAAGCATCCACGACAACTGCAAACCTTGACAACTGCCCTTCCATG
TCTCCATACCTCAGAGGCCAGAACAAGCTCTTTTTCAAACCGGATCTCACTCTGGAAGAAGTGCAGGCAGAAAACCCCAA
CGTGCGCAGAGGACACTATCGCCCGAGGAATGCAGGGCTCTGCAGCGGGTCGCCATCCTCATTCCACACCGGAACAGGGA
GAAGCACCTGATGTACCTGCTGGAACACCTTCATCCCTTTTTGCATCGGCAGCAGCTGGAGTACGGCATCTTTGTCATCC
ACCAGGCTGGAAGTAAAAAGTTTAATTGAGCCAAACTCTTGAATGTGGGCTATCTAGAAGCTCTCAAGGATGAAAATTGG
GACTGCTTTATATTCCACGATGTGGATCTGGTGCCGGAGAATGACCTGAACCTTTACAAGTGTGAGGATCAGCCCAAGCA
TCTGGTGGTTGGCAGGAACAGCACTGGATACAGGTTACGTTACAGCGGATATTTTTGGGGGCGTTACTGCCCTAAGCAGA
GAACAATTTTTCGAGGTGAAGGGATTCTCTAACAACTACTGGGGATGGGGAGGCGAAGACGATGACCTCAGACTCAGGGT
TGAGCTTCATAGAATGAAAATAATCCGGCCAATGCCTGAAGTGAGTAAATACACGATGATCTTCCATACCAGAGACCAAG
GCAATGAAGTGAACACAGAGCGGATGAAGCTCTTACATCAAGTGTTACGAGTCTGGAGAACAGATGGGTTGACCAGTTGT
GTTTATAAATTACTCTGTGTGGATTATAATCCTCTGTATATCAACATCACAGTGGATTTCTGGTCTGGC
ORF - retro_ecab_177 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
93.91 % |
Parental protein coverage: |
99.71 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MGCSVTFHLSYKFRLLLLLTLCLMVVGWATSNYFVAALQEIPKAKDFMANFNNPLVLEKKQTLTNEASTT |
| MGC.VTFHLSYKFRL.LLLTLCL.VVGWAT.NYFVAA.QEIPKAKDFM.NFNNPLVLEKKQTLTNEASTT |
Retrocopy | MGCNVTFHLSYKFRLPLLLTLCLTVVGWATRNYFVAAIQEIPKAKDFMPNFNNPLVLEKKQTLTNEASTT |
|
Parental | TANLDNCPSMSPYLRGQNKLFFKPDLTLEEVQAENPNVRRGRYHP-EECRALQRVAILIPHRNREKHLMY |
| TANLDNCPSMSPYLRGQNKLFFKPDLTLEEVQAENPNVRRG.Y.P.EECRALQRVAILIPHRNREKHLMY |
Retrocopy | TANLDNCPSMSPYLRGQNKLFFKPDLTLEEVQAENPNVRRGHYRP<EECRALQRVAILIPHRNREKHLMY |
|
Parental | LLEHLHPFLQRQQLEYGIYVIHQAGSKKFNRAKLLNVGYLEALKDENWDCFIFHDVDLVPENDLNLYKCE |
| LLEHLHPFL.RQQLEYGI.VIHQAGSKKFN.AKLLNVGYLEALKDENWDCFIFHDVDLVPENDLNLYKCE |
Retrocopy | LLEHLHPFLHRQQLEYGIFVIHQAGSKKFN*AKLLNVGYLEALKDENWDCFIFHDVDLVPENDLNLYKCE |
|
Parental | DQPKHLVVGRNSTGYRLRYSGYF-GGVTALSREQFFKVNGFSNNYWGWGGEDDDLRLRVQLHRMKIIRPM |
| DQPKHLVVGRNSTGYRLRYSGYF.GGVTALSREQFF.V.GFSNNYWGWGGEDDDLRLRV.LHRMKIIRPM |
Retrocopy | DQPKHLVVGRNSTGYRLRYSGYF>GGVTALSREQFFEVKGFSNNYWGWGGEDDDLRLRVELHRMKIIRPM |
|
Parental | PEVGKYTMIFHTRDQGNEVNIERMKLLHQVSRVWRTDGLSSCVYKLLSVDYNPLYINITVDFWSG |
| PEV.KYTMIFHTRDQGNEVN.ERMKLLHQV.RVWRTDGL.SCVYKLL.VDYNPLYINITVDFWSG |
Retrocopy | PEVSKYTMIFHTRDQGNEVNTERMKLLHQVLRVWRTDGLTSCVYKLLCVDYNPLYINITVDFWSG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .06 RPM |
19 .77 RPM |
SRP021940_cerebellum |
0 .00 RPM |
12 .83 RPM |
SRP021940_embryo |
0 .13 RPM |
30 .15 RPM |
SRP021940_placental_villous |
0 .10 RPM |
52 .97 RPM |
SRP021940_synovial_membrane |
0 .05 RPM |
12 .02 RPM |
SRP021940_testis |
0 .00 RPM |
25 .07 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_177 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_177 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_177 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.