>retro_ecab_192
AACACAGACAGAACTTCAACAAAGACAGAAAATATAAAAAAAGTACCAAACAGAAGTCACAGAGCTGAAGAATACAATAA
CTAAACTGAAAAATACACTACAGGGGTTCAACAGTAGGCTAGATGAAGTAGAAGAAAGGATCAGTGACCTGGAAGACAGT
ACCGTGGAACTTACCCAAACAGAACAGCAAAAAGAAAAAAGAATTTTAAAAAGCAAAGATAGCTTAAGAGACCTACGGGA
CGAGATCAAGCAGAACAACATTCACGTTATAGGGGTCCAAGAGAGAGAAAGGGACAGAAAATTCATTTGAGGAAATAATA
GCTGAAAACTTCCCTATTGAGGGAAGGAGACAGACATCCAGATCTGGGAAGTGCAGAGAGTTCCAAATAAGATGAACCCA
AAAAGATCCACACAAAGACACATTATAATTAAAATGTGAACTTAGATAAAGAGGAAATCTTAAAAGCAGCAAGAAAAAAA
CAATTTGTTACATACAAGGGAACCTCCATAAGACTATCAGCAGGTTTTCCAGCAGAAATTTGGCAGGCCAGAAGAGAGGG
GCATGATATATTCAAAGTGCTGAAAGCAAAAACCTGCCCACCAAGAATACTCTACCCAGCAAGGTTATCAATCAGAATTG
AAGGAGAGATAAAGAGTTTTCCAGCCAAGAAAAGCTAAAGGAGTTC
ORF - retro_ecab_192 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
50.21 % |
Parental protein coverage: |
98.73 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | HSENFSKETENIRK-YQIEVTELKNTPTELKNTIEGFKSRLDDTEERISGLEDRAVELIQSELSTQNRLE |
| .....S..TENI.K.YQ.EVTELKNT.T.LKNT..GF.SRLD..EERIS.LED..VEL.Q.E........ |
Retrocopy | NTDRTSTKTENIKK>YQTEVTELKNTITKLKNTLQGFNSRLDEVEERISDLEDSTVELTQTEQXXXXXXX |
|
Parental | DLAPSPKDCADSMRKCSIRTIGVQEGEE-KEDGAESVLKEIIAENFPNLG-DEREMCVEEVFRSPRYVNV |
| ....S..D..D......I..IGVQE.E...E...E....E....NFP..G..E......EV.R.P...N. |
Retrocopy | XXXXSLRDLRDEIKQNNIHVIGVQERER>TENSFEEIIAE----NFPIEG<KETDIQIWEVQRVPNKMNP |
|
Parental | KRPTARHIVVKL-AKMNDKERILRAARLKK-ITYKGTPIRLSVDFSAETLQARTDWNDIFKTLKDKNLQP |
| KR.T.RHI..K........E.IL.AAR.K...TYKGT.IRLS..F.AE..QAR....DIFK.LK.K...P |
Retrocopy | KRSTQRHIIIKM<VNLDKEE-ILKAARKKQFVTYKGTSIRLSAGFPAEIWQARREGHDIFKVLKAKTCPP |
|
Parental | RILYPAKISFRYEGEIKSFPEK-QKLRDF |
| RILYPA..S.R.EGEIKSFP.K..KL..F |
Retrocopy | RILYPARLSIRIEGEIKSFPAK<EKLKEF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
0 .00 RPM |
SRP021940_cerebellum |
0 .00 RPM |
0 .00 RPM |
SRP021940_embryo |
0 .00 RPM |
0 .00 RPM |
SRP021940_placental_villous |
0 .00 RPM |
0 .05 RPM |
SRP021940_synovial_membrane |
0 .00 RPM |
0 .03 RPM |
SRP021940_testis |
0 .00 RPM |
0 .00 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_192 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_192 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_192 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
6 retrocopies.