>retro_ecab_224
CGTCATGACCATAGCCTCCACATTCCCGTAGCCAGCTGCCCAGCTGGCCCTTCTATCCTGGCCCTGACATCTGGGCTCTA
CTCACCCAGCATCCTGTCGCAGAACCGTACACACAATCCCATCAGTCCAGGTCAGCTGCTGTCAGCAAACCACCAGACAT
GGGGCCCATGGATCCTGACAAGATGCAGGTCCCAGTGGGGTACGAGCCAGTTGGGGGAGACCTTGCTCTCTCCAGCATCC
ATGCCCACAAAATATTTGATTCTAGTAAACCCAAGTTCTCTAAGTTTGAACTGAAAGCATAGTCCATGATTAGGAAATCT
CACACAGTCTTCATACCTGGCTGTTGAAATTTAACAAGTACTGAGCTATGATTAGAAAGAACAACACAGCAGCCAAGTGC
TCTTGAGATGCCTGAAGGCTGAGGGAGAAAGAGATT
ORF - retro_ecab_224 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
51.63 % |
Parental protein coverage: |
58.75 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | QHDHSPHPPGLQPASSAAPSVMDLSSRASAPIHPGIPSPNCMQSPIRPGQLLPANRNT-PSPIDPDTIQV |
| .HDHS.H.P.......A.PS...L....S....P.I.S.N....PI.PGQLL.AN..T...P.DPD..QV |
Retrocopy | RHDHSLHIP--VASCPAGPSILALT---SGLYSPSILSQNRTHNPISPGQLLSANHQT<MGPMDPDKMQV |
|
Parental | PVGYEPDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDD-LKDDKYWARRRKNNMAAK |
| PVGYEP...DLALSSI.....FD..K.KFS..ELK...MI.K...VFIP...LK..KY.A..RKNN.AAK |
Retrocopy | PVGYEPVGGDLALSSIHAHKIFDSSKPKFSKFELKA*SMIRKSHTVFIPGC<LKFNKY*AMIRKNNTAAK |
|
Parental | RSRDARRLKENQI |
| .S.DA.RL.E..I |
Retrocopy | CS*DA*RLREKEI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
37 .01 RPM |
SRP021940_cerebellum |
0 .00 RPM |
50 .06 RPM |
SRP021940_embryo |
0 .00 RPM |
2 .40 RPM |
SRP021940_placental_villous |
0 .00 RPM |
1 .49 RPM |
SRP021940_synovial_membrane |
0 .00 RPM |
4 .15 RPM |
SRP021940_testis |
0 .00 RPM |
1 .66 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_224 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_224 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_224 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.