RetrogeneDB ID:

retro_ecab_60

Retrocopy
location
Organism:Horse (Equus caballus)
Coordinates:1:35835317..35835752(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSECAG00000004126
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSECAG00000009152
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ecab_60
ATGAAACTCCTTGTGCTGGCTGTTCTGCTTACAGTGGGCGCTGGTGAGAGCGGCATCAGCCCGCGGGCAGTGTGGCAGTT
CCGCAGCATGATCCAGTGCACGATCCCCAACAGCAAACCCTATTTGGAATACAATGACTACGGCTGTTACTGTGGCCTGG
GTGGATCTGGCACTTCTGTGGATGAACTGGATGCGTGCTGCCAGGTACACGACAATTGCTACACTAAGGCCAAGGAACTG
AGCAGCTGTAGATTCCTCGTGGACAACCCCTACACTGAAAGCTACAAATTCTCATGCTCTGGCACTGAGGTCACCTGCAG
CGACAAAAACAACGCCTGTGAGGCCTTTATCTGTAACTGTGACCGAAGTGCTGCCATCTGCTTTTCAAAGGCCCCATACA
ACCTGGAGAACAAGAACCTGGACAGCAAGAGGTGT

ORF - retro_ecab_60 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 95.86 %
Parental protein coverage: 98.64 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMKLLVLAVLLTVGAGENGISPRAVWQFRSMIQCTIPNSKPYLEFNDYGCYCGLGGSGTPVDELDACCQVH
MKLLVLAVLLTVGAGE.GISPRAVWQFRSMIQCTIPNSKPYLE.NDYGCYCGLGGSGT.VDELDACCQVH
RetrocopyMKLLVLAVLLTVGAGESGISPRAVWQFRSMIQCTIPNSKPYLEYNDYGCYCGLGGSGTSVDELDACCQVH
ParentalDNCYTQAKELSSCRFLVDNPYTESYKFSCSGTEVTCSDKNNACEAFICNCDRNAAICFSKAPYNPENKNL
DNCYT.AKELSSCRFLVDNPYTESYKFSCSGTEVTCSDKNNACEAFICNCDR.AAICFSKAPYN.ENKNL
RetrocopyDNCYTKAKELSSCRFLVDNPYTESYKFSCSGTEVTCSDKNNACEAFICNCDRSAAICFSKAPYNLENKNL
ParentalDSKRC
DSKRC
RetrocopyDSKRC

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP021940_articular_cartilage 0 .00 RPM 0 .00 RPM
SRP021940_cerebellum 0 .00 RPM 0 .16 RPM
SRP021940_embryo 0 .03 RPM 1 .36 RPM
SRP021940_placental_villous 0 .00 RPM 0 .05 RPM
SRP021940_synovial_membrane 0 .00 RPM 0 .00 RPM
SRP021940_testis 0 .00 RPM 22 .96 RPM
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_60 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_60 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ecab_60 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Equus caballus ENSECAG00000009152 1 retrocopy
retro_ecab_60 ,



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