>retro_ecab_770
TCACTGAAACCACAGAAAGAGACATCGAGGATAAGCGGGGACTACTGTCTTGATGACCAAACTTGGGCGTTAGGTCAAGC
ACTGAGGACACCTGATTCAAAGCTCTGCATTAACAGGGTTGAAGAACTTGACTTTTCATCTTCCAGAACTTCCTGAAGGA
AAAGGAGTGGCTTCCAAGGAAAGAATTACTCCATATTTATTATGACTGAGACAAATTAAGGATGGCACTCTTCAGGCTGC
AGTGACAGAAATTTTGGCCTTAATTGGCTATGCAAATCCAGCGAAAGGAAGAGGTATCTGAATTCTCACAATTGATGACG
GAGGAGCGAGGGATGCAGTTGCTCTTCAGATATGGTGAAAGTCAGTTCAACGCACTCGAAAGCCAGCTGTCAGCTCTTTG
ATTGCATTTCTGGTGTAAGCACAGGTGCCATATTAGCTTTCATGTTGGGATTGTTTCATATGCCCCTGGACAAACATGAG
GCAGTTATTATAAATTAGGATCACATGTGTTTTCACAAAATATTGCTGTTGGAATGGTCAAAATGAGCTGGAGCCATGCA
TTTTATGACCGTCAAATGTGGGGAATTTTCTTAAGGATAGAATGGGATATGCACTCATGATTGAAACAGCAAGAAGTCCA
TATGTCCAAAGGTAGCAGCATCAAGTCCCATGGTATAAAGTGGGGTAATGCCAAAAGTTTGCAGGTTCAGAAACTATGCT
CACCCTCCTGAAGTCAACTCTCACTGTTTGGGAGGCTGTCAGTATAAACTGTGGCAGGCCACTAGAGCTCCACCTGCTGC
TTCAGGCTACTGTGCAGAGTGTGCTTTTGGGAAACGATCCCCATCAAGATGGAGGTTTTCTTCTGAATAACCTTTCAGCA
TTAGCAATGCATGAGTGTAAGTGTTGGCCAGACGTCCCATTAGAGTGCATAGCATCCCTGGGCATTGGATGTTATGAGTA
TATGAGAAGCACCATGATATACATGAGCTTGAAAACCACACAGCCTAATGTCATCAACAGTGCTACAGATATAGAAGTCC
ATGTAATACTCGATAACCTATTACCTCCTGACACTTATTTCAGATTCAGTCCTGTATTGTGTGAAAACATATCTCTAGAT
GAAAGTCTAAATGAAAAACTTTATCAGATGCAGTTGGAACGGTTGAAGTACATAGAAAGCAATGAA
ORF - retro_ecab_770 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
68.97 % |
Parental protein coverage: |
51.09 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
6 |
Retrocopy - Parental Gene Alignment:
Parental | SLQREKASYSIIARVSIDNRTRALVQALRRTTDPKLCINRVEEL-TFHLLEFPEGKGVAVKEKIIPCLLR |
| SL...K....I......D..T.AL.QALR.T.D.KLCINRVEEL.TFHL.E.PEGKGVA.KE.I.P.LL. |
Retrocopy | SLKPQKETSRISGDYCLDDQTWALGQALR-TPDSKLCINRVEEL>TFHLPELPEGKGVASKERITPYLL* |
|
Parental | LRQIKDETLQAAVREILALIGYVDPVKGRGIRILAIDGGGTRGVVALQTLRKLVELTQKPV-HQLFDYIC |
| LRQIKD.TLQAAV.EILALIGY..P.KGRGI.IL.ID.GG.R..VALQ...K.V..T.KP...QLFD.I. |
Retrocopy | LRQIKDGTLQAAVTEILALIGYANPAKGRGI*ILTIDDGGARDAVALQIW*KSVQRTRKPA<CQLFDCIS |
|
Parental | GVSTGAILAFMLGLFHMPLDECEEL-YRKLGSDVFSQNVIVGTVKMSWSHAFYDSQTW-ENILKDRMGSS |
| GVSTGAILAFMLGLFHMPLD..E...Y.KLGS.VFSQN..VG.VKMSWSHAFYD.Q.W..N.LKDRMG.. |
Retrocopy | GVSTGAILAFMLGLFHMPLDKHEAV<YYKLGSHVFSQNIAVGMVKMSWSHAFYDRQMW<GNFLKDRMGYA |
|
Parental | LMIETARNP-TCPKVAAVSTIVNRGITPKAFVFRNYGHFPGINSHYLGGCQYKMWQAIRASSAAPGYFEE |
| LMIETAR.P..CPKVAA.S..V..G..PK...FRNY.H.P..NSH.LGGCQYK.WQA.RA..AA.GY..E |
Retrocopy | LMIETARSP<ICPKVAASSPMV*SGVMPKVCRFRNYAHPPEVNSHCLGGCQYKLWQATRAPPAASGYCAE |
|
Parental | YA-LGNDLHQDGGLLLNNPSALAMHECKCLWPDVPLECIVSLGTGRYESDVRNAVTYTSLKTKLSNVINS |
| .A.LGND.HQDGG.LLNN.SALAMHECKC.WPDVPLECI.SLG.G.YE...R....Y.SLKT...NVINS |
Retrocopy | CA>LGNDPHQDGGFLLNNLSALAMHECKC-WPDVPLECIASLGIGCYEY-MRSTMIYMSLKTTQPNVINS |
|
Parental | ATDTEEVHIMLDGLLPPDTYFRFNPVMCENIPLDESRNEKLDQLQLEGLKYIERNE |
| ATD..EVH..LD.LLPPDTYFRF.PV.CENI.LDES.NEKL.Q.QLE.LKYIE.NE |
Retrocopy | ATDI-EVHVILDNLLPPDTYFRFSPVLCENISLDESLNEKLYQMQLERLKYIESNE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
8 .44 RPM |
SRP021940_cerebellum |
0 .00 RPM |
8 .57 RPM |
SRP021940_embryo |
0 .00 RPM |
19 .49 RPM |
SRP021940_placental_villous |
0 .00 RPM |
18 .23 RPM |
SRP021940_synovial_membrane |
0 .00 RPM |
9 .64 RPM |
SRP021940_testis |
0 .00 RPM |
17 .39 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_770 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_770 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_770 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.