RetrogeneDB ID:

retro_ecab_851

Retrocopy
location
Organism:Horse (Equus caballus)
Coordinates:5:15127853..15128078(-)
Located in intron of:ENSECAG00000021962
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSECAG00000021149
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ecab_851
AAGGAGAAAACAAAGAAACACATCATAAAAAAGAAACTACATAATTCAATGGGTAGACCAGAACACACAGGATGAGAAAC
AAATGAAATGCAGGAGAGCCAGAAAACAAGTGATAAAATAGCAGCACTAAGCCCACATATATCCATAATCACACTAAATG
TAAATAGATTGAATTCTCCAATAAAAAGACACAGAGTGGCAAGATGGATTAAAGAACAAGACCCG

ORF - retro_ecab_851 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 62.67 %
Parental protein coverage: 61.98 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalQEILKKALIPEKKKRWNKIPKYTRQETKELQENQKMSDKMATLSPHISIITLNVNGLNSSIKIHRVATWI
.E..KK..I..K.......P..T..ET.E.QE.QK.SDK.A.LSPHISIITLNVN.LNS.IK.HRVA.WI
RetrocopyKEKTKKHIIKKKLHNSMGRPEHTG*ETNEMQESQKTSDKIAALSPHISIITLNVNRLNSPIKRHRVARWI
ParentalKEQDP
KEQDP
RetrocopyKEQDP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP021940_articular_cartilage 0 .00 RPM 0 .00 RPM
SRP021940_cerebellum 0 .00 RPM 0 .00 RPM
SRP021940_embryo 0 .00 RPM 0 .00 RPM
SRP021940_placental_villous 0 .00 RPM 0 .00 RPM
SRP021940_synovial_membrane 0 .00 RPM 0 .00 RPM
SRP021940_testis 0 .00 RPM 0 .00 RPM
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_851 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_851 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ecab_851 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Equus caballus ENSECAG00000021149 1 retrocopy
retro_ecab_851 ,



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