RetrogeneDB ID: | retro_eeur_204 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_207217:1744..1969(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIL1 | ||
Ensembl ID: | ENSEEUG00000009371 | ||
Aliases: | None | ||
Description: | peptidylprolyl isomerase (cyclophilin)-like 1 [Source:HGNC Symbol;Acc:9260] |
Percent Identity: | 96. % |
Parental protein coverage: | 70.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TKFHRIIKDFMIQGGDPTGTGRGGASLYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQ |
TKFHRIIKDFMIQGGDPTGTGRGGAS.YGKQFEDELHPDLKFTGA.ILAMANAGPDTNGSQFFVTLAP.Q | |
Retrocopy | TKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFTGARILAMANAGPDTNGSQFFVTLAPIQ |
Parental | WLDSK |
WLDSK | |
Retrocopy | WLDSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .22 RPM | 0 .64 RPM |
SRP017611_kidney | 7 .13 RPM | 2 .06 RPM |
SRP017611_liver | 1 .77 RPM | 0 .32 RPM |