RetrogeneDB ID: | retro_eeur_209 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_208787:2670..3277(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SIRT5 | ||
Ensembl ID: | ENSEEUG00000005650 | ||
Aliases: | None | ||
Description: | sirtuin 5 [Source:HGNC Symbol;Acc:14933] |
Percent Identity: | 89.22 % |
Parental protein coverage: | 64.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QSKEPNPGHLAIAECEARLHKQGRRVMVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVTENYKSP |
QSK.PNPGHLAIAECEA.LHKQGR.VMVITQNIDELH.KAGTKNLLEIHGSLFKT.CTSCGVVTENYKSP | |
Retrocopy | QSKDPNPGHLAIAECEAWLHKQGRQVMVITQNIDELHHKAGTKNLLEIHGSLFKTQCTSCGVVTENYKSP |
Parental | VCPALAGKGAPEPEAQDARIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPTILEEVDRELSLCDLCLVVG |
.CPALAGKGAPEPEAQDARIP.EKLPRCEEAGCGGLLRPHVVWFGENLDPTILEEVDRELSLCDLCL.VG | |
Retrocopy | ICPALAGKGAPEPEAQDARIPEEKLPRCEEAGCGGLLRPHVVWFGENLDPTILEEVDRELSLCDLCLMVG |
Parental | TSSVVYPAAMFAPQVSARGV--PVAEFNMETTPATNRFRFHFQ-GPCGTTLPEALAPHETETIS |
..SVVYPAAMFAPQVS......PVAEFNMETTPATNRFRFHFQ.GP....LPEALA.HETETIS | |
Retrocopy | IFSVVYPAAMFAPQVSSXXXXXPVAEFNMETTPATNRFRFHFQ>GPV-VQLPEALALHETETIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .32 RPM | 12 .41 RPM |
SRP017611_kidney | 0 .19 RPM | 24 .01 RPM |
SRP017611_liver | 0 .16 RPM | 19 .78 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019802 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005650 | 1 retrocopy |
retro_eeur_209 ,
|
Homo sapiens | ENSG00000124523 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008671 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000843 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017736 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007786 | 1 retrocopy |