RetrogeneDB ID: | retro_eeur_245 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_221905:10634..11104(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPRD1A | ||
Ensembl ID: | ENSEEUG00000007025 | ||
Aliases: | None | ||
Description: | regulation of nuclear pre-mRNA domain containing 1A [Source:HGNC Symbol;Acc:25560] |
Percent Identity: | 74.68 % |
Parental protein coverage: | 50.32 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NSQQSVQTLSLWLIHHRKHSRPI-VTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVIV |
....SVQ.L.LWL.HH.KHS.P...TVWE.EL.K.KPNRKLTFLYLANDVIQNSK.K.PEFT.DFAP.IV | |
Retrocopy | DTKESVQSLALWLTHHHKHSWPT<LTVWEWELCKTKPNRKLTFLYLANDVIQNSKQKRPEFTQDFAPLIV |
Parental | EAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKPRKRTYDQIKVDENENCSSLGS |
..FK.VSS.TDES.KK.LG.VLSIWEERSV.E.DVL.QLKQ.L.GDKKPRKRT..QIKVD.N.N.S.LGS | |
Retrocopy | LPFKYVSSATDESSKKCLG*VLSIWEERSVCESDVLGQLKQTLCGDKKPRKRTCSQIKVDKNDNSSFLGS |
Parental | PSEPPQTLDLVRALQDLE |
PSEPP.TLDL.RAL.DLE | |
Retrocopy | PSEPPKTLDLLRAL*DLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 40 .93 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .63 RPM |
SRP017611_liver | 0 .00 RPM | 13 .02 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000007025 | 1 retrocopy |
retro_eeur_245 ,
|
Gorilla gorilla | ENSGGOG00000007369 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018777 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000399 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006228 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009111 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009974 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000001641 | 1 retrocopy |