RetrogeneDB ID: | retro_eeur_254 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_224979:972..1442(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EAF1 | ||
Ensembl ID: | ENSEEUG00000002084 | ||
Aliases: | None | ||
Description: | ELL associated factor 1 [Source:HGNC Symbol;Acc:20907] |
Percent Identity: | 63.75 % |
Parental protein coverage: | 59.33 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KTRAEGSSKIQARMEQQPTRPPQPTQPPPPPPPMPFRAPTKPPAGPKTSPLKDNPSPEPQLDDIKRELRA |
KTRA.G.SKI.A.MEQ..T.P.QP.QPP.P..PMPFRAPTKPP.GPK.SPL.DNPSPE..LDDIKRELRA | |
Retrocopy | KTRAKGISKIHAHMEQ*RTHPLQPSQPPGPLAPMPFRAPTKPPGGPKISPLIDNPSPEHHLDDIKRELRA |
Parental | EVD-IIEQMSSTSGSSSSDSESSSGSDDDSSSSGAEDNGPASPPQPSHQQTYNSRPAVANGTSRPQGSNQ |
EVD....QMS......SS....................GPASPPQPSH.Q.Y..R..V.NGTS.PQGSNQ | |
Retrocopy | EVD<LTKQMS-STSGRSSSDSEXXXXXXXXXXXXXXXXGPASPPQPSH*QHYK-RSVVSNGTSWPQGSNQ |
Parental | LMNTLRNDLQLSESGSDSDD |
L.N..RNDLQLSESGSDSDD | |
Retrocopy | LINNPRNDLQLSESGSDSDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 38 .67 RPM |
SRP017611_kidney | 0 .00 RPM | 48 .76 RPM |
SRP017611_liver | 0 .00 RPM | 33 .76 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000006017 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007449 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000002084 | 1 retrocopy |
retro_eeur_254 ,
|
Monodelphis domestica | ENSMODG00000014543 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013964 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006597 | 2 retrocopies |