RetrogeneDB ID: | retro_eeur_3 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_128901:144..549(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000003544 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000009817 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSAALLRRGLELLGAPEAPQVARGPAKASGTRGQRARKAKATQAQKLRNSAKGKVPKSALAEFQKREKQN |
MS.ALLRRGLELLGA..APQVA.G.AKASGT..QR.RKAKATQAQKLRNSAK.KVPKSALA.FQKREKQN | |
Retrocopy | MSVALLRRGLELLGAL-APQVACGLAKASGTPEQRPRKAKATQAQKLRNSAKRKVPKSALAGFQKREKQN |
Parental | YLGANLKFMTASRNTMAENVIRKILHQNRGRKACDRPVTKTKKKKTEGTVFTEEDFQKFQQEYFGS |
YLGANLKFMTASRNTMAENVIRKIL.QNRGRKACD.PVTKT.KKKTEGTVFTEEDFQKFQQEYFGS | |
Retrocopy | YLGANLKFMTASRNTMAENVIRKILYQNRGRKACDPPVTKT-KKKTEGTVFTEEDFQKFQQEYFGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .63 RPM |
SRP017611_liver | 0 .16 RPM | 14 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010936 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009817 | 1 retrocopy |
retro_eeur_3 ,
|
Felis catus | ENSFCAG00000029275 | 1 retrocopy |