RetrogeneDB ID: | retro_eeur_303 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_247159:89..1481(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POLD2 | ||
Ensembl ID: | ENSEEUG00000006258 | ||
Aliases: | None | ||
Description: | polymerase (DNA directed), delta 2, accessory subunit [Source:HGNC Symbol;Acc:9176] |
Percent Identity: | 94.42 % |
Parental protein coverage: | 99.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SEQAAQRAQTLLSP-PSTNNATFARVPVVTYSNSSQPFRLGERSFNRQYAHIYATRLVQMRPFLESRAQQ |
SEQ.AQRAQ.LLSP..STNNATFARVPVVTYSNSSQPFRLGERSF.RQYAHIYAT..V.MRPFLESRAQQ | |
Retrocopy | SEQGAQRAQNLLSP<TSTNNATFARVPVVTYSNSSQPFRLGERSFIRQYAHIYATCVV*MRPFLESRAQQ |
Parental | HWG-TEVQIKKLCELQPAEKCCVVGTLFKAMLLQPSILREVSEEHNLVPQPPRSKYIHPDDELVLEDELQ |
HW..TEVQIKKLCELQPAEKCCVVGTLFKAMLLQPSILREVSEEHNLVPQPPR.KYI.PD.ELVLED.LQ | |
Retrocopy | HWA>TEVQIKKLCELQPAEKCCVVGTLFKAMLLQPSILREVSEEHNLVPQPPRGKYIYPDHELVLEDKLQ |
Parental | RIKLEGNIAVSRLVTGTVLAVLGSVRDDGKFLVEDHCFAELAPQKPAPTLDSDRFVLLVSGLGLGGGGGE |
RIKLEGNIAVS.LVTGTVLAVLGSVRDDGKFLVEDHCFAELAPQKPAPTLD.DRFVLLVSGLGLGGGGGE | |
Retrocopy | RIKLEGNIAVSQLVTGTVLAVLGSVRDDGKFLVEDHCFAELAPQKPAPTLDLDRFVLLVSGLGLGGGGGE |
Parental | SLLGTQLLVDVVTGQLGDEGEQRSAAQVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLD |
SLLGTQL..DVVTGQLGDEGEQRSAAQVS.VILA.NLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLD | |
Retrocopy | SLLGTQLPMDVVTGQLGDEGEQRSAAQVSCVILARNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLD |
Parental | EILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVS |
EILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDG.RFLGTSGQNVS | |
Retrocopy | EILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGIRFLGTSGQNVS |
Parental | DIFRYSSMEDHLEILEWTLRVRHISPTARDTLGCYPFYKTDPFVFPECPHVYFCGSAPNFGSKVIRGPEG |
.IFRYSSMEDHLEILEWTLRVRHISPTA.DTLGCYPFYKTDPFVFPECPHVYFCGSAP.FGSKVIRGPEG | |
Retrocopy | NIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFVFPECPHVYFCGSAPSFGSKVIRGPEG |
Parental | QTVLLVAVPDFSTTQTACLVNLRGLACQPISFSGFGADEDLGDLGP |
QTVLLVAVPDFST.QTACLVNL.GLACQPISFSGFGADEDLGDLGP | |
Retrocopy | QTVLLVAVPDFSTMQTACLVNLHGLACQPISFSGFGADEDLGDLGP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 5 .80 RPM |
SRP017611_kidney | 2 .81 RPM | 21 .94 RPM |
SRP017611_liver | 0 .64 RPM | 6 .27 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002933 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007954 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006258 | 1 retrocopy |
retro_eeur_303 ,
|
Homo sapiens | ENSG00000106628 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004424 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017597 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019138 | 1 retrocopy |