RetrogeneDB ID: | retro_eeur_317 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_252022:15217..15611(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000012151 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMED4 | ||
Ensembl ID: | ENSEEUG00000007627 | ||
Aliases: | None | ||
Description: | transmembrane emp24 protein transport domain containing 4 [Source:HGNC Symbol;Acc:22301] |
Percent Identity: | 80.15 % |
Parental protein coverage: | 57.76 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | SEGRFTFTS-HTPGDHQICLHSNSTKMSLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLL |
SEG.FTFT..HTPGD.QIC.HSNSTK..LFA...LRVHLDI.VGEH..NYPEIAAKDKLTELQLRA.QLL | |
Retrocopy | SEGYFTFTP<HTPGDNQICHHSNSTKLMLFASRGLRVHLDIRVGEHGSNYPEIAAKDKLTELQLRAHQLL |
Parental | DQVEQIQKEQDYQRVSYLERRFRLTSESTHQRVLWWPIAQTVI-LILTGIWQMRLLKSFFEAKKLV |
DQVEQIQKEQDYQR..Y.E..F.LTSEST.Q.VLWW.IAQTV..LILT.IWQMR.LKSFFEAKKLV | |
Retrocopy | DQVEQIQKEQDYQR--YREEHFQLTSESTNQLVLWWSIAQTVT<LILTSIWQMRHLKSFFEAKKLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .87 RPM | 14 .18 RPM |
SRP017611_kidney | 14 .44 RPM | 69 .01 RPM |
SRP017611_liver | 5 .63 RPM | 21 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000007627 | 2 retrocopies |
retro_eeur_12, retro_eeur_317 ,
|
Macropus eugenii | ENSMEUG00000006810 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016129 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003964 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014658 | 1 retrocopy |