RetrogeneDB ID: | retro_eeur_32 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
| Coordinates: | GeneScaffold_1661:153092..153307(-) | ||
| Located in intron of: | ENSEEUG00000004694 | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | IL10 | ||
| Ensembl ID: | ENSEEUG00000014739 | ||
| Aliases: | None | ||
| Description: | interleukin 10 [Source:HGNC Symbol;Acc:5962] |
Retrocopy-Parental alignment summary:
>retro_eeur_32
ATCAAGGAGCATGTGAACTCCCTGGGGGAAAAACTGAAGACCCTCAGGCTGAGGCTGCGATGCTGTCATCAATTCTTGCC
CTGTGAAAATAAAAGCAAGGCAGTGGAGAAGGTGAAGGATGCCTTTAGTAAGCTCCAAGAGAAAGGAGTTTACAAAGCCA
TGAGTGAGTTGACATCTTTATCAACTACATAGAAACCTACATGACAATGAAGATG
ATCAAGGAGCATGTGAACTCCCTGGGGGAAAAACTGAAGACCCTCAGGCTGAGGCTGCGATGCTGTCATCAATTCTTGCC
CTGTGAAAATAAAAGCAAGGCAGTGGAGAAGGTGAAGGATGCCTTTAGTAAGCTCCAAGAGAAAGGAGTTTACAAAGCCA
TGAGTGAGTTGACATCTTTATCAACTACATAGAAACCTACATGACAATGAAGATG
ORF - retro_eeur_32 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 94.52 % |
| Parental protein coverage: | 70.59 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | IKEHVNSLGEKLKTLRLRLRRCHRFLPCENKSKAVEKVKDAFSKLQEKGVYKAMSEF-DIFINYIETYMT |
| IKEHVNSLGEKLKTLRLRLR.CH.FLPCENKSKAVEKVKDAFSKLQEKGVYKAMSE..DIFINYIETYMT | |
| Retrocopy | IKEHVNSLGEKLKTLRLRLRCCHQFLPCENKSKAVEKVKDAFSKLQEKGVYKAMSEL<DIFINYIETYMT |
| Parental | MKM |
| MKM | |
| Retrocopy | MKM |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 0 .16 RPM |
| SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
| SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Erinaceus europaeus was not studied using ChIP-Seq data.
Erinaceus europaeus was not studied using EST data.
Erinaceus europaeus was not studied using FANTOM5 data.
retro_eeur_32 was not experimentally validated.
Retrocopy orthology:
Erinaceus europaeus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Erinaceus europaeus | ENSEEUG00000014739 | 1 retrocopy |
retro_eeur_32 ,
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