>retro_eeur_322
ATGTTCCCCTCCAGGAGGAAGGCGATGCAGCTGCCCTGGCAGGACAGCAGGTCCAGGTTGCTCCCCAGCGGCCTCCCCAG
GAAGTGCTCTGTCTTCCACCTCTTTGTGGCCTGTCTTTTACTGGGCTTCCTCTCTGGCTGCGGCTTAGCTGCTCTGGTGA
CATGGCCCGGGCAGCCAGGGGACAAGGACAGGAGACCCCAGGCCCGTCCCGGGCCTGTCCCCCAGAGCTGCCGCCTGAGC
ACTGGGAAGAAGACCCGTCTTGGGGCCCCCACCGCCTAGCAGTGCTGGTGCCCTTCCGGGAACGCTTCGAGGAGCAGCTA
GTCTTCGTAATCCACATGCACCGCTTTCTGAGCCGGAAGAAGATCCAGCACCACATCTATGTGCTCAATCAGGTGGACCA
CTTCAGGTTCAACAGGGCAGTACTCATCAGTGTGGGCTTCCTGGAGAGCAGCAACACCACCGACTACATCGCCATGCACA
ACGTGGATCTGCTGCCCCTTAACGAGGAGCTGGACTATGGCTTCTCCGAGGCCGGGTCCTTCCACGTGCCTTCCCCTGAG
CTGCACCAGCTCTATCACTACAAGACCTAAGTGGGCGGCATCCTGCTGCTGTCCAAGCAGCACTACCAGCTGTGCAAGGA
ATGTCCAATCGCTTCTGGGGTTGGGGCCGCAAGGATGATGAGTTCTACCGGCGCATCAAAGGAGCGGGGCTCCAGATCCT
CCGGCCCTCAGAAATCAAAACTGTATACAAGACGTTCCACCACTTGCATAACCCTGCCTGGCGGAAGAGGGACCAGAAGC
GCATTGCCGCGCAGAAGCAGGAACAGTTCAAGGTGGACCTCGAGGGCGGCCTCAACAGGTCAAGTACAGAGTGGACTCCC
GGACAGCCCTGTCT
ORF - retro_eeur_322 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.84 % |
Parental protein coverage: |
92.05 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MFPSRRKAVQLPWQDGRSRLLPSSLPRKCSVFHLFVACLLLGFLS-LLWLQLSCSGDMARAARGQGQETP |
| MFPSRRKA.QLPWQD.RSRLLPS.LPRKCSVFHLFVACLLLGFLS..L.L..S.....A....GQ..ETP |
Retrocopy | MFPSRRKAMQLPWQDSRSRLLPSGLPRKCSVFHLFVACLLLGFLS<WLRLSCSGDMARAARGQGQ--ETP |
|
Parental | GPSRACPPELPPEHWEEDPSWGPHRLAVLVPFRERFEELLVFVPHMHRFLSRKKIQHHIYVLNQVDHFRF |
| GPSRACPPELPPEHWEEDPSWGPHRLAVLVPFRERFEE.LVFV.HMHRFLSRKKIQHHIYVLNQVDHFRF |
Retrocopy | GPSRACPPELPPEHWEEDPSWGPHRLAVLVPFRERFEEQLVFVIHMHRFLSRKKIQHHIYVLNQVDHFRF |
|
Parental | NRAALINVGFLESSNTTDYIAMHDVDLLPLNEELDYGFPEAGPFHVASPELHPLYHYKTYVGGILLLSKQ |
| NRA.LI.VGFLESSNTTDYIAMH.VDLLPLNEELDYGF.EAG.FHV.SPELH.LYHYKT.VGGILLLSKQ |
Retrocopy | NRAVLISVGFLESSNTTDYIAMHNVDLLPLNEELDYGFSEAGSFHVPSPELHQLYHYKT*VGGILLLSKQ |
|
Parental | HYRLC-NGMSNRFWGWGREDDEFYRRIKGAGLQVLRPSEIKTGYKTFRHLHDPAWRKRDQKRIAAQKQEQ |
| HY.LC..GMSNRFWGWGR.DDEFYRRIKGAGLQ.LRPSEIKT.YKTF.HLH.PAWRKRDQKRIAAQKQEQ |
Retrocopy | HYQLC<QGMSNRFWGWGRKDDEFYRRIKGAGLQILRPSEIKTVYKTFHHLHNPAWRKRDQKRIAAQKQEQ |
|
Parental | FKVDREGGLN-TVKYRVDSRTALS |
| FKVD.EGGLN..VKYRVDSRTALS |
Retrocopy | FKVDLEGGLN<QVKYRVDSRTALS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .48 RPM |
8 .54 RPM |
SRP017611_kidney |
0 .19 RPM |
11 .06 RPM |
SRP017611_liver |
0 .16 RPM |
8 .20 RPM |
Erinaceus europaeus was not studied using ChIP-Seq data.
Erinaceus europaeus was not studied using EST data.
Erinaceus europaeus was not studied using FANTOM5 data.
retro_eeur_322 was not experimentally validated.
Retrocopy orthology:
Erinaceus europaeus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.