>retro_eeur_349
GGGAAACATTTTACTCCTGAGGAATATGAAAATTACAAAAGAAAACTTTTACAGAACAGATTATTTGTGAACTGGCGATC
ACCAACTGGAATGGACTGTAAACTTGTGGGTCCAGAGACACTGTGTTTTCGTACGCACAGGTATAAGCAACATGATACTG
ACTTTGAAATGATTCCACAACAGCGCCCCATTAGCTTGCTTTGCTGAGTGCCTGGCTGCCAGTGCAGGGCTTACCTTTAC
ATCTCTACGAATGGCACGCAGCCCATTCGCTGCAGGTGCAAGCACTTTGTTGATCAGCACAGTGCTGCACCTGGATCCAA
ATGCAATGCCTGCCCCGAGTGTTCAGGATTCCACAGCTCCTTCACTTGTGGTTTTGGCTATCCCTCATATGCCCATGACA
CAGTTGTAGAAACTAAGCAAGAAAGACTGGCTCAAGGAAGACCAGTGGGAGAAGACATTCTTTATGCAGCTATGCGAGGA
TTAACTGGCTTCAGCTCACTGGCAGACGGCTCCATGTGGCTAGATGATAGTGGAGCTGGTGCACCTTCAGTTGAATTTTT
AGACTCTCCAGTTACAGCCAATGGACCACCCAATTCTAAAAGCTTTTCAAACGCCCTCTAGATCTCCAGAAACACTAGCA
ORF - retro_eeur_349 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.19 % |
Parental protein coverage: |
78.7 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | GKLFTPEEYEDYKRKVLPMRLQNRLFVSWRSPTGIDCKLVGPETLCFCTHRYKQHKTDFETIPQQRPISL |
| GK.FTPEEYE.YKRK.....LQNRLFV.WRSPTG.DCKLVGPETLCF.THRYKQH.TDFE.IPQQRPISL |
Retrocopy | GKHFTPEEYENYKRKL----LQNRLFVNWRSPTGMDCKLVGPETLCFRTHRYKQHDTDFEMIPQQRPISL |
|
Parental | PCRVTGCQCRAYLYVPMNGTQPIRCRCKHFADQHSAAPGSKCNACSKCSGFHSCFTCGCGQPAYAHDTVV |
| .C.V.GCQCRAYLY...NGTQPIRCRCKHF.DQHSAAPGSKCNAC..CSGFHS.FTCG.G.P.YAHDTVV |
Retrocopy | LC*VPGCQCRAYLYISTNGTQPIRCRCKHFVDQHSAAPGSKCNACPECSGFHSSFTCGFGYPSYAHDTVV |
|
Parental | ETKQERLALGKPVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGAGAPPVEFLDSPVTA-MDHPFLKAFQVP |
| ETKQERLA.G.PVG.DI.YAAM.GLTGFSSLA.G.M.LDDSGAGAP.VEFLDSPVTA.MDHP.LKAFQ.P |
Retrocopy | ETKQERLAQGRPVGEDILYAAMRGLTGFSSLADGSMWLDDSGAGAPSVEFLDSPVTA>MDHPILKAFQTP |
|
Parental | SSSSPETLA |
| .S.SPETLA |
Retrocopy | -SRSPETLA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
2 .26 RPM |
SRP017611_kidney |
0 .00 RPM |
5 .81 RPM |
SRP017611_liver |
0 .00 RPM |
4 .02 RPM |
Erinaceus europaeus was not studied using ChIP-Seq data.
Erinaceus europaeus was not studied using EST data.
Erinaceus europaeus was not studied using FANTOM5 data.
retro_eeur_349 was not experimentally validated.
Retrocopy orthology:
Erinaceus europaeus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.