RetrogeneDB ID: | retro_eeur_358 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_269265:5059..5454(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCNA | ||
Ensembl ID: | ENSEEUG00000003069 | ||
Aliases: | None | ||
Description: | proliferating cell nuclear antigen [Source:HGNC Symbol;Acc:8729] |
Percent Identity: | 78.2 % |
Parental protein coverage: | 50.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | EQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAXX-XX |
EQEYSCVVKMPSGEFARICRDLSH.GDAVVIS.AKDGVKFS.S.ELGNGNIKLSQT.NVDKEEEA..... | |
Retrocopy | EQEYSCVVKMPSGEFARICRDLSHSGDAVVISWAKDGVKFSTSRELGNGNIKLSQTNNVDKEEEAVN<HE |
Parental | XNETVQLTGALR-LNFFTKATPLCSTVTLSM-ADVPLVVEYKFADMAPSKYYSAPKLEDEEKS |
..E.VQLT.ALR.LNFFTKATPL.S.VTLSM.ADVPL.VEY....M...KYY.A.K.EDEEKS | |
Retrocopy | MSEPVQLTFALRYLNFFTKATPLSSMVTLSMSADVPLIVEYQIVNMGHLKYYLASKIEDEEKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .22 RPM | 5 .64 RPM |
SRP017611_kidney | 9 .75 RPM | 15 .94 RPM |
SRP017611_liver | 3 .22 RPM | 7 .23 RPM |