RetrogeneDB ID: | retro_eeur_414 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_292267:11123..11640(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E1B | ||
Ensembl ID: | ENSEEUG00000005920 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4E family member 1B [Source:HGNC Symbol;Acc:33179] |
Percent Identity: | 83.43 % |
Parental protein coverage: | 89.64 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | PNSWALWFFKNERSRAWRENLQMVTRFDTVEDFWALYNNIKLPSKLSPGCDYALFRDGIEPMWEDSSNKR |
P..WALWFFKNERS..WRENLQ.VTRFDTVEDFWALYNNIKLPSKLSPGCDYALF.DGIEPM.EDSSNK. | |
Retrocopy | PTLWALWFFKNERSWTWRENLQTVTRFDTVEDFWALYNNIKLPSKLSPGCDYALFQDGIEPM*EDSSNKQ |
Parental | GGR-WLVSLAKQLRHLDLDRLWLDTMLCLIGEGFGDYGPDVCGAVVNIRTKGDKIALWTREADSQASVMH |
.G..WLVSLAKQLRHLDLD.LWLDTM.CLI.E.FG..GPDVCGAVVNI.TKGDKI.LWT.EADSQ.SVMH | |
Retrocopy | DGH<WLVSLAKQLRHLDLDHLWLDTMFCLIRESFGE*GPDVCGAVVNICTKGDKIVLWTLEADSQSSVMH |
Parental | IGRVYKECLGLS-MKATIGYQAHADTATKSNSLAR |
IGRVYKE.LGLS.MKAT.GYQAHA.....SNSLAR | |
Retrocopy | IGRVYKEHLGLS<MKATTGYQAHAEHSQQSNSLAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003103 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005920 | 1 retrocopy |
retro_eeur_414 ,
|
Erinaceus europaeus | ENSEEUG00000015153 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000027919 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000005097 | 3 retrocopies | |
Mus musculus | ENSMUSG00000074895 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012532 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008875 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000001631 | 2 retrocopies | |
Drosophila melanogaster | FBgn0035709 | 1 retrocopy |