RetrogeneDB ID: | retro_eeur_500 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_328641:4955..5633(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000015241 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ILF2 | ||
Ensembl ID: | ENSEEUG00000013100 | ||
Aliases: | None | ||
Description: | interleukin enhancer binding factor 2 [Source:HGNC Symbol;Acc:6037] |
Percent Identity: | 99.56 % |
Parental protein coverage: | 57.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EAVAALGNKVVESLRTQDPSEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSAL |
EAVAALGNKVVESLRTQDPSEVLTMLTNET.FEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSAL | |
Retrocopy | EAVAALGNKVVESLRTQDPSEVLTMLTNETSFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSAL |
Parental | AAIRHARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCL |
AAIRHARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCL | |
Retrocopy | AAIRHARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCL |
Parental | QILAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASE |
QILAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASE | |
Retrocopy | QILAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASE |
Parental | ISTWDGVIVTPSEKAY |
ISTWDGVIVTPSEKAY | |
Retrocopy | ISTWDGVIVTPSEKAY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 34 .16 RPM | 53 .98 RPM |
SRP017611_kidney | 31 .69 RPM | 49 .14 RPM |
SRP017611_liver | 10 .93 RPM | 19 .78 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000013100 | 1 retrocopy |
retro_eeur_500 ,
|
Macropus eugenii | ENSMEUG00000003651 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001847 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000008149 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000667 | 1 retrocopy |