RetrogeneDB ID: | retro_eeur_552 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_343312:5527..5811(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DYNLRB2 | ||
Ensembl ID: | ENSEEUG00000013344 | ||
Aliases: | None | ||
Description: | dynein, light chain, roadblock-type 2 [Source:HGNC Symbol;Acc:15467] |
Percent Identity: | 60.42 % |
Parental protein coverage: | 97.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MTEVEETLKRIQSHKGVIGTMVVNAEGIPIRTTLDNSTTVQYAGLLHQLTMKAR-STVRDIDPQNDLTFL |
M.EVEETLK..QS.KGV.G..VVN...IPI..T.DN....QYA..LH....KAR.STVR..DPQND.TFL | |
Retrocopy | MAEVEETLKCLQSQKGVQGIIVVNTRNIPIQSTVDNAPITQYANPLHNFILKAR>STVREDDPQNDPTFL |
Parental | RIRSKKHEIMVAP-DKEYLLIVIQNP |
.I.SKK..IMV.P..K.Y.LI..QNP | |
Retrocopy | *IHSKKNDIMVTP>NKDYFLILTQNP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .96 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .81 RPM |
SRP017611_liver | 0 .00 RPM | 0 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000020024 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013344 | 2 retrocopies |
retro_eeur_134, retro_eeur_552 ,
|
Sarcophilus harrisii | ENSSHAG00000002755 | 1 retrocopy |