RetrogeneDB ID: | retro_eeur_664 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_378031:56192..56457(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFA6 | ||
Ensembl ID: | ENSEEUG00000004117 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa [Source:HGNC Symbol;Acc:7690] |
Percent Identity: | 57.3 % |
Parental protein coverage: | 68.22 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | IFSRDLKEAKRRVRELYRAWYREVPNTVHLFQ-LDISVKQGRDKVREMFMKNAHVTDPRVLDLLVIKGKM |
IF..D.K........L..AWY.EV..TVHL...LDIS.K.G.DKV.EM.M..A..TDPR...L.VIKG.. | |
Retrocopy | IFTQDMKAKQMVYAKLCCAWY*EVLTTVHLYL>LDISAKWGWDKV*EMLMLSAFSTDPRMVNLPVIKG*I |
Parental | ELEETIKVWKQRTHIMRFF |
ELEETI.VWKQ.TH.M.FF | |
Retrocopy | ELEETIQVWKQQTHTMWFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 29 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 81 .77 RPM |
SRP017611_liver | 0 .00 RPM | 40 .52 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ciona savignyi | ENSCSAVG00000001466 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000004117 | 1 retrocopy |
retro_eeur_664 ,
|
Monodelphis domestica | ENSMODG00000007030 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022450 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015446 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014762 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000004570 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008569 | 1 retrocopy | |
Sorex araneus | ENSSARG00000003814 | 1 retrocopy |