RetrogeneDB ID: | retro_etel_1009 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_200016:10904..12364(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000012122 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DDX5 | ||
Ensembl ID: | ENSETEG00000019950 | ||
Aliases: | None | ||
Description: | DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:HGNC Symbol;Acc:2746] |
Percent Identity: | 83.83 % |
Parental protein coverage: | 80.33 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 7 |
Parental | GYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQEHPDLTRRTAQD |
GY..D.DRG.D.GFGAPRFGGSR..PLSGKKFGN.GEKLVKKKWNLD.LPKFEK.FYQ.HPDL..RTA.. | |
Retrocopy | GYLNDQDRGWDGGFGAPRFGGSRGVPLSGKKFGNLGEKLVKKKWNLDKLPKFEKKFYQKHPDLAGRTA*N |
Parental | VET-YRRSKEVTVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTG |
VET..RRSKEVTVRGHNCPKPVLN.YEANFPANVMD.IARQNFTEPTAIQ.Q.WPVALSGLDMVGVAQT. | |
Retrocopy | VET>NRRSKEVTVRGHNCPKPVLNVYEANFPANVMDAIARQNFTEPTAIQTQRWPVALSGLDMVGVAQTA |
Parental | S-GKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ |
S.GK..SYLLPAIVHINHQPFLERGDGPICLVLAPTREL.QQVQQVAAEYCR.CRLKSTCIYGGAPKG.Q | |
Retrocopy | S>GKR-SYLLPAIVHINHQPFLERGDGPICLVLAPTRELVQQVQQVAAEYCRTCRLKSTCIYGGAPKGLQ |
Parental | IRDLERGVEICI-ATPGRLIDFLE-CGK-TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM |
..D.ERGVEICI..TPG..IDFLE..GK.T.LR.TTYLVLDEADRMLDMG.EPQIRKIVDQ.RPDRQ.LM | |
Retrocopy | LCDMERGVEICI<STPGKRIDFLE<VGK<TSLR-TTYLVLDEADRMLDMGLEPQIRKIVDQLRPDRQALM |
Parental | WSATWPKEVRQLAEDFLKD-YIHINIGALE-LSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTI |
W.ATWPK.VR.L.ED.LK...I.I..GALE....N..ILQ.VDVC...EKDEK.IRLMEEIMSEKENKTI | |
Retrocopy | WRATWPKGVRRLDEDSLKH>HINI--GALE<TESNQTILQFVDVCR--EKDEKRIRLMEEIMSEKENKTI |
Parental | VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN |
VFVETKRRC.ELTRKMRRDGWPA.GIHG.KSQQE..WVLNEFKHGK.PILIA.DVASRGLD.EDVKFVIN | |
Retrocopy | VFVETKRRCGELTRKMRRDGWPAIGIHGHKSQQE*GWVLNEFKHGKTPILIAIDVASRGLDLEDVKFVIN |
Parental | YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRG |
YDYPN..EDYIHRIGR..RSTKTGTAYTFFTPNNI.QVSDLISVL.EANQAINP.LLQLVEDRGSGRSRG | |
Retrocopy | YDYPN-LEDYIHRIGRNDRSTKTGTAYTFFTPNNIQQVSDLISVLQEANQAINPNLLQLVEDRGSGRSRG |
Parental | RGGMKDDRRDR |
RGGMKDDRRD. | |
Retrocopy | RGGMKDDRRDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000019950 | 1 retrocopy |
retro_etel_1009 ,
|
Felis catus | ENSFCAG00000003512 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009496 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000003743 | 4 retrocopies | |
Mus musculus | ENSMUSG00000020719 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001932 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000030680 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009490 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012149 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008793 | 1 retrocopy |