>retro_etel_1033
TCCTACCTGGGCGGCATGGTGTCCAGCAACTCAGCACTATAGTGTGTCAACTACCTCACTCAGGTTCTGGGTAAATCCTG
CAAGCCAATTCCAGCCATGCTCCTTAGGGTGACTCTCCTGAAGAAGAACCCGCTGCCCAATACCTGTGTGTGTGTGTTGT
TAATTGTAGCTTCAGTAGCTGTTTTCCTGTACAAGCCAAAGGAAGGTTGTTGGAAGAACACACAATTGCCTAAATTGCCT
ATGGAGAGCCACTCCTGCTCTTGTCTCTAACCCTGGATGGACTGACAGACGTTTTCCAGGACCACATGCAAGCTCATTAT
CAAACATGCCCCAATCACGTGATGTTGAACATCAACCTTGTGGTCCACCATGCTGCTGGGCGCCGGGATGCTGTTCACTG
GGAAGCTCTGGGAGTCCCTGTGCTTTGCAGAGAGGTACCCTGCCACCATCTCTAACATCCTGCTCTTTGGCCTGACCAGT
GCCCTGGGTCAGAGCTGCATCTTTAGGATCATTGTACTTTGGGGCCCCTGACCTGCTCAAACATCCCCGCAGTTCACAAG
TTCTTCCCCATCTTGGTCTCTGTGATCCTCTTTGCCAACCCTGTCAGCTCCATGCAGAGGGTCGGCACTGTGCTGGGGTT
CCTGGATCTCCGTCTCGTAAAAAAACGTTGGGAAAGGAGCCAAAAAGACTTTTCAC
ORF - retro_etel_1033 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
65.4 % |
Parental protein coverage: |
80.14 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | SYLGAMVSSNSALQFVNYPTQXXXXXXXXXXXMLLGVTLLKKKYPL-AKYLCVLLIVAGVALFMYKPKKV |
| SYLG.MVSSNSAL..VNY.TQ...........MLL.VTLLK.K.PL.A.YLCV...............K. |
Retrocopy | SYLGGMVSSNSAL*CVNYLTQVLGKSCKPIPAMLLRVTLLK-KNPL<AQYLCVCVVNCSFSSCFPVQAKG |
|
Parental | VGVEEHT---IGYGELLLLLSLTLDGLTGVSQDHMRAHYQTGSNHMMLNINL-WSTLMLGAGILFTGELW |
| ...EEHT...I.YGE.LLLLSLTLDGLT.V.QDHM.AHYQT..NH.MLNINL.WST..LGAG.LFTG.LW |
Retrocopy | RLLEEHTIA*IAYGEPLLLLSLTLDGLTDVFQDHMQAHYQTCPNHVMLNINL>WSTMLLGAGMLFTGKLW |
|
Parental | EFLSFAERYPAIISNILLFGLTSALGQSFIFMTVVYF-GPLTCSIITTTRKFFTILASVILFANPISSMQ |
| E.L.FAERYPA.ISNILLFGLTSALGQS.IF...V...GPLTCS.I....KFF.IL.SVILFANP.SSMQ |
Retrocopy | ESLCFAERYPATISNILLFGLTSALGQSCIFRIIVLW<GPLTCSNIPAVHKFFPILVSVILFANPVSSMQ |
|
Parental | WVGTVLVFLGLGLDAK-FGKGAKKTSH |
| .VGTVL.FL.L.L..K..GKGAKKT.H |
Retrocopy | RVGTVLGFLDLRLVKK>VGKGAKKTFH |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1033 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
4 retrocopies.