>retro_etel_1113
GACCTCATCTACAACGTGTGCTGGAACCACAACGGTAGCCTCTTCTACTCTGCCTGCAAGGACAAGAGCGTGCGCATCAT
CGACCCCCGCTGGGGCACCCTGGTGGCGGAGCGGGAGAAGGCCCACGAGGGCGCCAGGCCCATGCGGGCCGTCTTCCTAG
CCGATGGCAAGGTGCTCACCACAGGATTCAGCCGCATGAGTGAGCGGCAACTGGCACTCTGGGACCCTGACAACCTGGAG
GAGCCCATGGCTCTGCAGGAGCTGGATTCCAGCAACGGTACCCTGCTGCCCTTCTACGACCCGGACACCAGCGTGGTCTA
TGTCTGTGGCAAGGGTGACTCCAGCATCTGGTACTTTGAGATCACTAACGAGGCCCCCTACATCCACTTCCTGAACACCT
TTACCAGCAAAGAGCCGCAGAGGGGCATGGGCAGCATGCCCAAGAGGGGCTTGAAGGTCAGCAAGTGTGAGATTGCCCGG
TTCTATAAGCTTCATGAGCGCAAGTGTGAGCCCATTGTCATGACTGTGCCAAGAAAGTCGGACTTTTTCCAGGATGACCT
GTACCCTGACACAGCAGGGCCCGAGGCAGCCCTGGAAGCAGAGGAGTGGGTGAGCGGCCGGGATGCTGACCCCACCCTTA
TCTCCCTGCGGGAGGCTTACGTGCCCAGCAAGCAGCGAGACCTGAAGGTCAGCCGG
ORF - retro_etel_1113 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
67.24 % |
Parental protein coverage: |
54.01 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | DTIYSVDWSRDGGLICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSDGKILTTGFSRMSERQ |
| D.IY.V.W...G.L....C.DK.VR.I.PR.GT.VAE....HEG.RP..AVF..DGK.LTTGFSRMSERQ |
Retrocopy | DLIYNVCWNHNGSLFYSACKDKSVRIIDPRWGTLVAEREKAHEGARPMRAVFLADGKVLTTGFSRMSERQ |
|
Parental | VALWDTKHLSEPLSLQELDTINGRR-PFFELD-NIVYHCG-GDSSIRYFEITSEAPYLHYLCMFSSKESQ |
| .ALWD...L.EP..LQELD..NG...PF...D...VY.CG.GDSSI.YFEIT.EAPY.H.L..F.SKE.Q |
Retrocopy | LALWDPDNLEEPMALQELDSSNGTLLPFYDPDTSVVYVCGKGDSSIWYFEITNEAPYIHFLNTFTSKEPQ |
|
Parental | RGMGYMPKRGLEVNKCEIARFYKLHERKCEPIAMTVPRKSDLFQEDLYPPTAGPDPALTAEEWFGGRDAG |
| RGMG.MPKRGL.V.KCEIARFYKLHERKCEPI.MTVPRKSD.FQ.DLYP.TAGP..AL.AEEW..GRDA. |
Retrocopy | RGMGSMPKRGLKVSKCEIARFYKLHERKCEPIVMTVPRKSDFFQDDLYPDTAGPEAALEAEEWVSGRDAD |
|
Parental | PLLISLKDGYVPSKSRELRVNR |
| P.LISL...YVPSK.R.L.V.R |
Retrocopy | PTLISLREAYVPSKQRDLKVSR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1113 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.